Gene omics information

Query gene ID PsAffx.C1023000002_at
Gene name
Organism Glycine max


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.4158.1PsAffx.C1023000002_atPsAffx.C1023000002--3e+0At4g21540SPHK1 (SPHINGOSINE KINASE 1)S.X.H.G.
0.3346.1HgAffx.21514.1.S1_atCD749005--5e-1At5g45875SCRL27 (SCR-Like 27)S.X.H.G.
0.2126.6PsAffx.C178000021_atPsAffx.C178000021--1e+0At1g10060branched-chain amino acid aminotransferase 1 / branched-chain amino acid transaminase 1 (BCAT1)S.X.H.G.
0.2025.1PsAffx.C1000091_atPsAffx.C1000091--4e-1At2g21490LEA (DEHYDRIN LEA)S.X.H.G.
0.1923.7PsAffx.CL1693Contig1_atPsAffx.CL1693Contig1--6e+0At5g20190bindingS.X.H.G.
0.1822.3HgAffx.9055.1.S1_atCB379446--2e+0At5g49015Expressed proteinS.X.H.G.
0.1114.2HgAffx.18004.1.S1_atCB279764--2e+0At4g13000protein kinase family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
22.899.8GSM29292395_1465.1L.R283L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.899.3GSM29308281_C019.1N.R9N1U, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.599.1GSM29426823_2428.2I.R297P, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.498.9GSM29311328_C047.1O.R9O2L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.598.7GSM147946Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stage
6.498.6GSM17162416_Y.A.M.3, Experimental replicate YGSE7124Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.098.5GSM29283818_C211.1L.SLL3L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.598.3GSM29364168_2065.2B.R129U, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.498.2GSM29215810_C010.1A.R9A2P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.498.2GSM1717136_Z.C.M.5, Experimental replicate ZGSE7124Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.360894PsAffx.C419000002_atPsAffx.C419000002--4e-1At2g23067unknown proteinC.G.S.X.
0.285e-126452PsAffx.C2000256_atPsAffx.C2000256--1e-1At1g27565unknown proteinC.G.S.X.
0.054e-963PsAffx.C29000024_atPsAffx.C29000024--1e+0At1g19910AVA-P2C.G.S.X.
0.044e-963PsAffx.C29000055_atPsAffx.C29000055--2e+0At5g47720acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putativeC.G.S.X.
0.034e-654PsAffx.C361000009_atPsAffx.C361000009--8e-1At3g56880VQ motif-containing proteinC.G.S.X.
0.012e-552PsAffx.C59000080_atPsAffx.C59000080--6e+0At5g53470ACBP1 (ACYL-COA BINDING PROTEIN 1)C.G.S.X.
0.013e-448PsAffx.C51000051_atPsAffx.C51000051--4e+0At5g58180ATYKT62C.G.S.X.
0.013e-448PsAffx.C45000070_atPsAffx.C45000070--4e-2At3g28230-C.G.S.X.
0.021e-346PsAffx.C300000005_atPsAffx.C300000005--1e+0At1g09840ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.023e+034Arabidopsis thalianaAt4g21540828239SPHK1 (SPHINGOSINE KINASE 1)Encodes a sphingosine kinase, also has enzyme activity towards other plant long-chain sphingoid bases. Involved in guard cell ABA signalling and seed germination.---C.G.S.X.
0.023e-136Hordeum vulgareContig20292_atContig20292--3e-4At3g58120BZIP61C.G.S.X.
0.021e+036Oryza sativaOs07g0123700CB679601-WD40-like domain containing protein3e+0At5g14420RGLG2 (RING domain Ligase2)C.G.S.X.
0.029e-136Populus trichocarpaPtpAffx.222639.1.S1_atpmrna40185hypothetical protein-1e-13At5g53540MSP1 protein, putative / intramitochondrial sorting protein, putativeC.G.S.X.
0.023e-344Triticum aestivumTaAffx.17228.1.A1_atCK208338--5e+0At1g32760glutaredoxin family proteinC.G.S.X.
0.023e+032Vitis vinifera1613272_atAY043235.1cellulase CEL2-like-3e+0At1g78420protein binding / zinc ion bindingC.G.S.X.
0.023e-136Zea maysZm.10518.1.S1_atBQ577750--2e+0At1g02710glycine-rich proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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