CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PsAffx.C1000260_s_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.94 99.2 PsAffx.C1000260_s_at PsAffx.C1000260 - - 9e-10 At5g59690 histone H4 S.X. H.G.
0.50 71.7 PsAffx.CL1912Contig1_at PsAffx.CL1912Contig1 - - 2e+0 At1g17880 nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative S.X. H.G.
0.40 57.1 PsAffx.CL171Contig1_at PsAffx.CL171Contig1 - - 9e-1 At3g14595 unknown protein S.X. H.G.
0.38 53.3 PsAffx.C65000078_at PsAffx.C65000078 - - 1e+0 At1g64400 long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative S.X. H.G.
0.38 53.3 GmaAffx.58230.1.S1_s_at BE583535 - - 3e+0 At4g11870 unknown protein S.X. H.G.
0.30 40.4 PsAffx.C93000028_at PsAffx.C93000028 - - 1e+0 At1g28327 - S.X. H.G.
0.29 39.0 PsAffx.C26000021_at PsAffx.C26000021 - - 2e+0 At1g67860 unknown protein S.X. H.G.
0.18 22.3 PsAffx.CL626Contig1_at PsAffx.CL626Contig1 - - 3e+0 At1g74430 MYB95 (myb domain protein 95) S.X. H.G.
0.17 21.2 PsAffx.CL1397Contig1_at PsAffx.CL1397Contig1 - - 8e+0 At4g17670 senescence-associated protein-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
103.4 100.0 GSM294303 54_3153.2I.R9I2L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
58.7 99.9 GSM293756 88_2113.2C.R285L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
55.5 99.9 GSM171703 4_W.E.I.5, Experimental replicate W GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
49.1 99.9 GSM292384 59_C093.1F.R9F1L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
42.0 99.9 GSM293015 20_1089.1N.R055L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
41.6 99.9 GSM292405 9_C101.1F.R9F2L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
38.0 99.9 GSM294151 16_3139.2H.R9H3L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
36.4 99.9 GSM292360 2_C093.1F.R9F1U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
34.2 99.9 GSM293248 35_1155.1P.R097L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
33.1 99.9 GSM293071 71_1055.1N.R032L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.88 0 817 PsAffx.psHB031xH05f_s_at PsAffx.psHB031xH05f - - 1e-9 At5g59690 histone H4 C.G. S.X.
0.58 6e-141 500 PsAffx.psZS013xM05f_at PsAffx.psZS013xM05f - - 9e-14 At5g59970 histone H4 C.G. S.X.
0.64 6e-141 500 PsAffx.psZO010iH04r_s_at PsAffx.psZO010iH04r - - 8e-14 At5g59970 histone H4 C.G. S.X.
0.65 6e-141 500 PsAffx.CL536Contig1_at PsAffx.CL536Contig1 - - 7e-14 At5g59970 histone H4 C.G. S.X.
0.45 5e-55 214 Gma.14873.1.S1_at CD487575 - - 1e-44 At1g07820 histone H4 C.G. S.X.
0.46 4e-37 155 Gma.5323.1.A1_s_at CD402653 - - 4e-41 At5g59690 histone H4 C.G. S.X.
0.35 4e-28 125 HgAffx.22840.2.S1_at CA939858 - - 6e-2 At5g59690 histone H4 C.G. S.X.
0.41 4e-28 125 Gma.5909.1.S1_at AW348400 - - 6e-52 At5g59690 histone H4 C.G. S.X.
0.30 6e-24 111 HgAffx.22840.1.S1_at CK350642 - - 7e-8 At1g07820 histone H4 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.52 9e-10 63 Arabidopsis thaliana At5g59690 836090 histone H4 F:DNA binding;P:nucleosome assembly;C:thylakoid;MOPFV - - - C.G. S.X.
0.62 8e-101 365 Hordeum vulgare Contig35_at Contig35 - - 3e-19 At5g59690 histone H4 C.G. S.X.
0.60 6e-74 278 Oryza sativa Os09g0433600 AK058686.1 - Histone H4 2e-20 At1g07660 histone H4 C.G. S.X.
0.47 1e-15 83 Populus trichocarpa PtpAffx.4633.2.S1_at CA823688 - - 9e-47 At1g07820 histone H4 C.G. S.X.
0.56 3e-93 341 Triticum aestivum Ta.10329.9.S1_a_at CA728584 - - 9e-20 At5g59690 histone H4 C.G. S.X.
0.43 5e-55 212 Vitis vinifera 1620586_at CA809291 - - 1e-7 At5g59690 histone H4 C.G. S.X.
0.53 2e-82 303 Zea mays Zm.6721.12.A1_s_at BG265991 Histone H4 - 6e-18 At1g07660 histone H4 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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