CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PsAffx.C1000175_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.94 99.2 PsAffx.C1000175_at PsAffx.C1000175 - - 5e+0 At5g23290 PDF5 (PREFOLDIN 5) S.X. H.G.
0.94 99.2 HgAffx.3013.1.S1_at CK349173 - - 3e-1 At1g66890 - S.X. H.G.
0.94 99.2 PsAffx.C115000050_s_at PsAffx.C115000050 - - 2e+0 At5g66490 unknown protein S.X. H.G.
0.94 99.2 HgAffx.11003.1.S1_at CB824101 - - 4e+0 At3g28630 - S.X. H.G.
0.94 99.2 GmaAffx.55284.1.S1_at BM108343 - - 3e+0 At5g10390 histone H3 S.X. H.G.
0.94 99.2 PsAffx.C68000072_at PsAffx.C68000072 - - 4e+0 At2g41410 calmodulin, putative S.X. H.G.
0.91 98.6 HgAffx.5776.1.S1_at CB826435 - - 1e+0 At5g59030 COPT1 (copper transporter 1) S.X. H.G.
0.87 93.2 PsAffx.C63000067_at PsAffx.C63000067 - - 1e-1 At5g05150 AtATG18e S.X. H.G.
0.86 93.0 PsAffx.C177000015_at PsAffx.C177000015 - - 2e-1 At4g25150 acid phosphatase, putative S.X. H.G.
0.85 92.8 PsAffx.C6000193_at PsAffx.C6000193 - - 1e+1 Atmg00450 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1262.1 100.0 GSM292923 95_1465.1L.R283L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
103.2 100.0 GSM294009 61_3097.2F.R9F2L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
49.1 99.9 GSM292897 71_1469.1L.R285L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
44.5 99.9 GSM293374 5_1574.1Q.R160P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
42.4 99.9 GSM292492 9_1272.1G.R173P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
38.6 99.9 GSM292838 18_C211.1L.SLL3L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
34.7 99.9 GSM292836 16_1473.1L.R287U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
33.7 99.9 GSM293543 58_2017.2A.R245L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
27.0 99.8 GSM293082 81_C019.1N.R9N1U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
25.1 99.8 GSM292448 49_C110.1G.V7G1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.38 0 1522 PsAffx.C16000054_at PsAffx.C16000054 - - 3e+0 At4g36690 ATU2AF65A C.G. S.X.
0.35 0 749 PsAffx.C344000004_s_at PsAffx.C344000004 - - 4e-1 At5g23030 TET12 (TETRASPANIN12) C.G. S.X.
0.35 9e-141 502 PsAffx.C78000059_at PsAffx.C78000059 - - 2e+0 At4g17520 nuclear RNA-binding protein, putative C.G. S.X.
0.45 2e-120 434 PsAffx.C3000112_at PsAffx.C3000112 - - 2e+0 At2g06005 unknown protein C.G. S.X.
0.40 5e-93 343 PsAffx.C20000090_at PsAffx.C20000090 - - 3e+0 At5g19570 unknown protein C.G. S.X.
0.01 7e-3 44 PsAffx.C145000009_at PsAffx.C145000009 - - 3e+0 At4g30300 ATNAP15 C.G. S.X.
0.02 4e-1 38 PsAffx.psML001xB10f_s_at PsAffx.psML001xB10f - - 3e+0 At2g07728 unknown protein C.G. S.X.
0.01 4e-1 38 PsAffx.C200000009_at PsAffx.C200000009 - - 2e+0 At5g17510 unknown protein C.G. S.X.
0.01 2e+0 36 PsAffx.CL225Contig1_at PsAffx.CL225Contig1 - - 3e-7 At1g09270 IMPA-4 (IMPORTIN ALPHA ISOFORM 4) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 5e+0 34 Arabidopsis thaliana At5g23290 832393 PDF5 (PREFOLDIN 5) F:unfolded protein binding;P:protein folding;C:prefoldin complex;MFOAPB - - - C.G. S.X.
0.02 9e-3 42 Hordeum vulgare Contig14506_at Contig14506 - - 7e+0 At2g20618 - C.G. S.X.
0.02 2e-3 46 Oryza sativa OsAffx.791.1.S1_at - - - 0 C.G. S.X.
0.01 2e+0 36 Populus trichocarpa PtpAffx.223395.1.S1_x_at pmrna41374 - - 3e+0 At1g68585 unknown protein C.G. S.X.
0.02 2e-2 42 Triticum aestivum TaAffx.94236.1.S1_at CA731347 - - 3e-1 At1g30650 WRKY14 C.G. S.X.
0.01 3e-1 36 Vitis vinifera 1612905_s_at CB345326 hypothetical protein LOC100258381 - 5e-3 At1g12830 unknown protein C.G. S.X.
0.01 5e-1 36 Zea mays Zm.1491.1.A1_at BE050951 hypothetical protein LOC100278490 - 7e-2 At4g17670 senescence-associated protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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