Gene omics information

Query gene ID	PsAffx.C1000081_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	89.5	PsAffx.C1000081_at	PsAffx.C1000081	-	-	8e-1	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	S.X.	H.G.	Please select
0.67	86.1	PsAffx.C11000047_at	PsAffx.C11000047	-	-	3e-1	At5g28660	-	S.X.	H.G.	Please select
0.61	81.8	PsAffx.CL499Contig1_at	PsAffx.CL499Contig1	-	-	8e+0	At4g08190	Ras-related GTP-binding protein, putative	S.X.	H.G.	Please select
0.59	79.5	PsAffx.CL174Contig1_at	PsAffx.CL174Contig1	-	-	4e-7	At4g22220	ISU1	S.X.	H.G.	Please select
0.59	79.5	PsAffx.psHB015xA08f_at	PsAffx.psHB015xA08f	-	-	9e+0	At3g26460	major latex protein-related / MLP-related	S.X.	H.G.	Please select
0.58	78.8	PsAffx.CL351Contig1_at	PsAffx.CL351Contig1	-	-	2e+0	At2g01080	-	S.X.	H.G.	Please select
0.55	76.3	PsAffx.psHB015xA08f_s_at	PsAffx.psHB015xA08f	-	-	9e+0	At3g26460	major latex protein-related / MLP-related	S.X.	H.G.	Please select
0.50	71.7	PsAffx.CL132Contig1_at	PsAffx.CL132Contig1	-	-	1e-2	At3g63080	ATGPX5 (glutathione peroxidase 5)	S.X.	H.G.	Please select
0.41	58.1	PsAffx.CL1866Contig1_at	PsAffx.CL1866Contig1	-	-	2e-1	At1g60830	U2 snRNP auxiliary factor large subunit, putative	S.X.	H.G.	Please select
0.38	53.3	PsAffx.CL315Contig1_at	PsAffx.CL315Contig1	-	-	8e-1	At2g13290	glycosyl transferase family 17 protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
247.5	100.0	GSM171680	29_Y.F.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
210.4	100.0	GSM171611	13_W.E.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
204.3	100.0	GSM171660	24_Y.I.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
202.1	100.0	GSM171675	28_W.I.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
162.2	100.0	GSM171646	21_V.E.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
130.8	100.0	GSM171725	9_Z.F.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
127.2	100.0	GSM171693	31_Z.I.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
124.2	100.0	GSM171606	12_V.I.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
118.3	100.0	GSM171677	28_Z.E.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
114.8	100.0	GSM171664	25_Y.E.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	2e-172	607	PsAffx.psHB027xI10f_s_at	PsAffx.psHB027xI10f	-	-	3e-1	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	C.G.	S.X.	Please select
0.02	2e-2	42	PsAffx.psMC002xH22f_s_at	PsAffx.psMC002xH22f	-	-	3e+0	At1g53320	AtTLP7 (TUBBY LIKE PROTEIN 7)	C.G.	S.X.	Please select
0.01	2e-2	42	PsAffx.C293000007_at	PsAffx.C293000007	-	-	6e-4	At4g33200	XI-I	C.G.	S.X.	Please select
0.01	2e-2	42	PsAffx.C29000033_at	PsAffx.C29000033	-	-	3e+0	At3g03920	Gar1 RNA-binding region family protein	C.G.	S.X.	Please select
0.01	2e-2	42	PsAffx.C109000016_at	PsAffx.C109000016	-	-	3e-1	At1g22370	AtUGT85A5 (UDP-glucosyl transferase 85A5)	C.G.	S.X.	Please select
0.02	7e-2	40	PsAffx.CL690Contig1_s_at	PsAffx.CL690Contig1	-	-	1e-1	At5g17870	PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6)	C.G.	S.X.	Please select
0.01	7e-2	40	PsAffx.C54000095_at	PsAffx.C54000095	-	-	2e-1	At4g33640	unknown protein	C.G.	S.X.	Please select
0.01	7e-2	40	PsAffx.C47000029_at	PsAffx.C47000029	-	-	3e-1	At3g25577	unknown protein	C.G.	S.X.	Please select
0.02	7e-2	40	PsAffx.C282000003_at	PsAffx.C282000003	-	-	2e-2	At3g59060	PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e-1	36	Arabidopsis thaliana	At5g47700	834821	60S acidic ribosomal protein P1 (RPP1C)	F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane;MFPOAB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e-1	38	Hordeum vulgare	Contig16848_at	Contig16848	-	-	4e+0	At3g43800	ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27)	C.G.	S.X.	Please select
0.03	2e-3	46	Oryza sativa	OsAffx.26604.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e-1	38	Populus trichocarpa	PtpAffx.202977.1.S1_at	pmrna5891	hypothetical protein	-	4e-1	At3g01020	ISU2 (ISCU-LIKE 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	1e-2	42	Triticum aestivum	Ta.7378.25.S1_at	BJ221397	Protein H2B-8	-	1e-22	At1g07790	HTB1	C.G.	S.X.	Please select
0.03	6e-2	38	Vitis vinifera	1614311_at	CF516097	hypothetical protein LOC100264243	-	2e-6	At1g15780	unknown protein	C.G.	S.X.	Please select
0.02	1e-3	44	Zea mays	ZmAffx.859.1.A1_at	AI770696	-	-	8e-1	At5g58580	ATL63 (ARABIDOPSIS TÓ	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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