CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os12g0639600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os12g0639600 AK122084.1 - Soluble quinoprotein glucose dehydrogenase domaincontaining protein 2e-8 At1g74790 catalytic S.X. H.G.
0.50 68.0 Os01g0864700 AU172991 - Protein kinase domain containing protein 3e-51 At3g44200 NEK6 ("NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6") S.X. H.G.
0.44 58.1 Os04g0650900 AK064480.1 - Alpha-N-acetylglucosaminidase 3e-14 At5g13690 alpha-N-acetylglucosaminidase family / NAGLU family S.X. H.G.
0.40 51.1 Os08g0118000 AK068379.1 - HMG-I and HMG-Y, DNA-binding domain containingprotein 2e-8 At4g12080 DNA-binding family protein S.X. H.G.
0.36 44.0 Os01g0584200 NM_192517.1 - Dilute domain containing protein 2e-1 At1g08730 XIC S.X. H.G.
0.17 12.6 Os09g0293400 AK059627.1 - Ubiquitin-conjugating enzyme E2 1e-10 At5g56150 UBC30 (ubiquitin-conjugating enzyme 30) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.9 98.4 GSM149411 Rice Bala 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
11.6 98.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.8 97.6 GSM159178 Root, 7-day-old Seedling, biological rep 2 GSE6893 Expression data for reproductive development in rice
7.7 97.6 GSM359922 Pokkali root, salt-treated, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
7.6 97.5 GSM359923 Pokkali root, salt-treated, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
7.3 97.5 GSM159179 Root, 7-day-old Seedling, biological rep 3 GSE6893 Expression data for reproductive development in rice
6.8 97.3 GSM359920 Pokkali root, control, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
6.8 97.3 GSM359910 IR29 root, salt-treated, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
6.8 97.3 GSM359924 Pokkali root, salt-treated, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
6.6 97.3 GSM159177 Root, 7-day-old Seedling, biological rep 1 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.43 9e-105 383 Os03g0691800 AK073577.1 - HIPL1 protein precursor 4e-4 At1g74790 catalytic C.G. S.X.
0.02 1e-2 44 Os08g0551200 9636.m04454 - Protein of unknown function DUF630 domaincontaining protein 4e-1 At5g47220 ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2) C.G. S.X.
0.01 2e-4 50 Os03g0682600 9631.m04655 - Argonaute 4 protein 6e-6 At1g48410 AGO1 (ARGONAUTE 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 2e-8 61 Arabidopsis thaliana At1g74790 843818 catalytic F:catalytic activity;P:biological_process unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;OBPMAF - - - C.G. S.X.
0.09 3e-5 52 Glycine max GmaAffx.82810.1.S1_at AI437666 - - 1e-18 At1g74790 catalytic C.G. S.X.
0.02 6e-1 36 Hordeum vulgare Contig13672_at Contig13672 - - 3e+0 At3g14030 - C.G. S.X.
0.10 3e-17 91 Populus trichocarpa PtpAffx.213898.1.S1_at pmrna27100 hypothetical protein - 2e-11 At5g39970 catalytic C.G. S.X.
0.22 9e-48 192 Triticum aestivum Ta.5666.1.S1_at CA644554 - - 3e-5 At5g39970 catalytic C.G. S.X.
0.01 9e-2 38 Vitis vinifera 1618687_at CB345064 hypothetical protein LOC100245038 - 2e+0 At1g74790 catalytic C.G. S.X.
0.05 2e-12 73 Zea mays Zm.11856.1.A1_at BM381264 - - 3e+0 At4g36260 STY2 (STYLISH 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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