CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os12g0620400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os12g0620400 AK072503.1 - Methyl-CpG binding domain containing protein 8e-1 At5g43175 basic helix-loop-helix (bHLH) family protein S.X. H.G.
0.91 98.9 Os10g0464400 AY332469.1 - Riboflavin kinase / FAD synthetase family protein 3e-22 At4g21470 ATFMN/FHY (riboflavin kinase/FMN hydrolase) S.X. H.G.
0.80 94.6 Os02g0773300 AK071811.1 - Pyridoxal phosphate-dependent deaminase familyprotein 3e-12 At1g48420 D-CDES (D-CYSTEINE DESULFHYDRASE) S.X. H.G.
0.63 82.7 Os08g0562700 AK066773.1 - Aminopeptidase N 4e-44 At1g63770 peptidase M1 family protein S.X. H.G.
0.50 68.0 Os05g0101200 AY262026.1 - Peroxisomal membrane anchor protein (Pex14p)domain containing protein 1e+0 At5g61660 glycine-rich protein S.X. H.G.
0.47 62.3 Os01g0104100 AK072797.1 - The start codon is not identified. 1e-2 At3g54360 protein binding / zinc ion binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.1 94.8 GSM357135 14-day-old seedling, heat shock, rep 1 GSE14275 Expression data for heat shock in rice seedlings
3.1 94.8 GSM357122 14-day-old seedling, rep 1 GSE14275 Expression data for heat shock in rice seedlings
3.1 94.8 GSM421677 XOC, 8 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
3.0 94.6 GSM207565 Mudanjiang8 wild type control rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
2.9 94.5 GSM207567 Mudanjiang8 wild type control rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
2.9 94.5 GSM357136 14-day-old seedling, heat shock, rep 2 GSE14275 Expression data for heat shock in rice seedlings
2.8 94.3 GSM357137 14-day-old seedling, heat shock, rep 3 GSE14275 Expression data for heat shock in rice seedlings
2.8 94.3 GSM207566 Mudanjiang8 wild type control rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
2.7 94.1 GSM207558 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
2.7 94.1 GSM357134 14-day-old seedling, rep 3 GSE14275 Expression data for heat shock in rice seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-1 40 Os05g0546400 AK109087.1 - Conserved hypothetical protein 1e-1 At1g17880 nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative C.G. S.X.
0.02 1e-1 40 Os07g0132300 AU101784 - Conserved hypothetical protein 8e-2 At4g37810 unknown protein C.G. S.X.
0.02 1e-1 40 Os08g0411300 9636.m03173 - Conserved hypothetical protein 9e-4 At1g75550 glycine-rich protein C.G. S.X.
0.01 3e-2 42 Os06g0248500 9634.m01395 - U box domain containing protein 7e-1 At5g43410 ethylene-responsive factor, putative C.G. S.X.
0.01 3e-2 42 Os09g0566500 9637.m03362 - Protein kinase family protein 1e-26 At5g03730 CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) C.G. S.X.
0.01 1e-1 40 Os12g0100100 AK061492.1 - Transcriptional coactivator-like protein 1e-7 At5g02530 RNA and export factor-binding protein, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e-1 36 Arabidopsis thaliana At5g43175 834335 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PM - - - C.G. S.X.
0.02 1e-3 46 Glycine max Gma.6951.1.S1_at AW100450 - - 3e-12 At1g15340 MBD10 C.G. S.X.
0.23 3e-63 242 Hordeum vulgare Contig3489_at Contig3489 - - 4e+0 At3g13882 structural constituent of ribosome C.G. S.X.
0.02 1e+0 36 Populus trichocarpa PtpAffx.28965.1.S1_at DN484862 - - 7e-1 At3g56850 AREB3 (ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3) C.G. S.X.
0.29 2e-69 264 Triticum aestivum Ta.28299.2.S1_at BE515497 MBD6 - 3e-2 At4g00905 - C.G. S.X.
0.02 1e-3 44 Vitis vinifera 1616332_at CF210511 hypothetical protein LOC100259445 - 2e-1 At4g27660 unknown protein C.G. S.X.
0.27 6e-80 297 Zea mays Zm.651.1.S1_at AY029558.1 methyl binding domain - 4e+0 At5g40040 60S acidic ribosomal protein P2 (RPP2E) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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