Gene omics information

Query gene ID	Os12g0604700
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.9	Os12g0604700	AK072382.1	-	LSTK-1-like kinase	1e-15	At3g63280	ATNEK4 (NIMA-RELATED KINASE 4)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.63	82.7	Os03g0787200	AK103438.1	-	IQ calmodulin-binding region domain containingprotein	2e-11	At3g22190	IQD5 (IQ-domain 5)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.57	77.0	Os05g0168800	AK101183.1	-	Spectrin repeat containing protein	5e-3	At5g58320	kinase interacting protein-related	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.57	77.0	Os06g0609500	AK071731.1	-	Myb, DNA-binding domain containing protein	3e-6	At2g01060	myb family transcription factor	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.51	68.7	Os02g0290500	AK065628.1	-	Ubiquitin domain containing protein	2e-9	At1g64460	phosphatidylinositol 3- and 4-kinase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.49	64.4	Os01g0744000	AK101026.1	-	Kinesin heavy chain (Fragment)	2e-24	At1g18410	kinesin motor protein-related	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	Os01g0801000	AK101426.1	-	Apurinic endonuclease-redox protein (DNA-(apurinicor apyrimidinic site) lyase) (EC 4.2.99.18)	3e-7	At2g41460	ARP	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.42	53.9	Os05g0394200	CR286943	-	Protein of unknown function DUF630 domaincontaining protein	1e+0	At2g32580	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.42	53.9	Os03g0308200	AK062228.1	-	ARM repeat fold domain containing protein	5e-7	At5g26850	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.37	45.0	Os09g0549400	AK103727.1	-	Conserved hypothetical protein	3e+0	At5g52800	DNA primase	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.0	98.6	GSM409430	9311_young panicle 2cm, biological rep1	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
11.7	98.2	GSM409431	9311_young panicle 2cm, biological rep2	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
10.2	98.0	GSM409428	Nipponbare_young panicle 2cm, biological rep4	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
10.2	98.0	GSM409433	9311_young panicle 2cm, biological rep4	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
10.1	98.0	GSM409432	9311_young panicle 2cm, biological rep3	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
9.7	98.0	GSM159188	SAM, biological rep 3	GSE6893	Expression data for reproductive development in rice
9.4	97.9	GSM409421	Nipponbare_young panicle 2cm, biological rep1	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
8.9	97.8	GSM409422	Nipponbare_young panicle 2cm, biological rep2	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
8.8	97.8	GSM429983	Rice mutant phoenix (pho) panicle rep1	GSE17194	Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
8.7	97.8	GSM159186	SAM, biological rep 1	GSE6893	Expression data for reproductive development in rice

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.39	0	773	Os03g0636800	AK073129.1	-	LSTK-1-like kinase	5e-31	At3g04810	ATNEK2 (NIMA-RELATED KINASE 2)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.32	6e-35	151	Os07g0176600	AK067073.1	-	Protein kinase domain containing protein	1e-12	At3g04810	ATNEK2 (NIMA-RELATED KINASE 2)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.05	2e-6	56	Os01g0864700	AU172991	-	Protein kinase domain containing protein	3e-51	At3g44200	NEK6 ("NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6")	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.05	2e-6	56	Os05g0440800	AK073901.1	-	Protein kinase domain containing protein	5e-53	At3g44200	NEK6 ("NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6")	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	4e-2	42	Os04g0122200	9632.m00228	-	-	6e-3	At2g46070	MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	1e-15	85	Arabidopsis thaliana	At3g63280	825503	ATNEK4 (NIMA-RELATED KINASE 4)	Encodes AtNek4, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e-3	46	Glycine max	GmaAffx.54724.1.S1_at	AW185133	-	-	1e-15	At3g04810	ATNEK2 (NIMA-RELATED KINASE 2)	C.G.	S.X.	Please select
0.03	1e-1	38	Hordeum vulgare	Contig9144_at	Contig9144	-	-	1e-15	At3g20860	ATNEK5 (NIMA-RELATED KINASE5)	C.G.	S.X.	Please select
0.10	1e-13	79	Populus trichocarpa	PtpAffx.200696.1.S1_at	pmrna1345	hypothetical protein	-	8e-139	At3g44200	NEK6 ("NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6")	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.60	0	1112	Triticum aestivum	TaAffx.98504.1.S1_at	BG607257	-	-	4e-12	At1g54510	ATNEK1 (ARABIDOPSIS THALIANA NIMA-RELATED SERINE/THREONINE KINASE 1)	C.G.	S.X.	Please select
0.03	4e-4	46	Vitis vinifera	1621574_at	CF511059	hypothetical protein LOC100241803	-	3e-2	At5g28290	ATNEK3 (NIMA-RELATED KINASE3)	C.G.	S.X.	Please select
0.47	0	835	Zea mays	Zm.4277.2.S1_a_at	BQ704082	-	-	5e-17	At1g54510	ATNEK1 (ARABIDOPSIS THALIANA NIMA-RELATED SERINE/THREONINE KINASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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