CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os12g0599000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.46 60.9 Os12g0599000 9640.m03982 - - 3e-2 At3g14260 unknown protein S.X. H.G.
0.71 89.6 Os03g0776600 9631.m05531 - - 4e+0 At5g26790 unknown protein S.X. H.G.
0.71 89.6 Os01g0662900 9629.m04542 - - 1e+0 At3g49845 - S.X. H.G.
0.70 88.4 Os11g0213500 9630.m04131 - TPR-like domain containing protein 2e+0 At4g36240 zinc finger (GATA type) family protein S.X. H.G.
0.67 87.2 Os08g0396400 9636.m03051 - - 4e+0 At5g22580 - S.X. H.G.
0.63 82.7 Os08g0360200 9636.m02684 - Conserved hypothetical protein 2e-1 At1g33055 unknown protein S.X. H.G.
0.61 81.2 Os07g0614400 AK103733.1 - Conserved hypothetical protein 5e-5 At1g72490 unknown protein S.X. H.G.
0.59 78.0 Os08g0166100 9636.m00605 - - 5e-1 At1g63550 - S.X. H.G.
0.57 77.0 Os04g0113400 NM_187296.1 - - 2e-1 At1g10140 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
57.2 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
30.1 99.7 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
29.6 99.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.9 99.5 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.8 99.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.2 99.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.5 99.4 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.0 99.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.0 99.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.3 99.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e-3 44 Os12g0571700 AK058855.1 - Hypothetical protein 3e-1 At3g46090 ZAT7 C.G. S.X.
0.03 2e-7 57 Os12g0597800 AK108042.1 - HAT dimerisation domain containing protein 3e+0 At2g06500 hAT dimerisation domain-containing protein / transposase-related C.G. S.X.
0.02 3e-3 44 Os01g0907900 9629.m06750 - Terminal ear1 5e-12 At1g67770 TEL2 (TERMINAL EAR1-LIKE 2) C.G. S.X.
0.02 3e-3 44 Os05g0120200 9633.m00205 - ABC transporter related domain containing protein 1e-6 At3g53510 ABC transporter family protein C.G. S.X.
0.02 1e-2 42 Os12g0281801 9634.m00143 - - 6e-1 At2g05510 glycine-rich protein C.G. S.X.
0.01 3e-3 44 Os02g0316900 AK070114.1 - Winged helix DNA-binding domain containing protein 4e-2 At2g31790 UDP-glucoronosyl/UDP-glucosyl transferase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-2 40 Arabidopsis thaliana At3g14260 820646 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.04 1e-1 38 Glycine max Gma.9903.1.S1_at AW349241 - - 8e-9 At2g19570 CDA1 (CYTIDINE DEAMINASE 1) C.G. S.X.
0.03 1e-2 40 Hordeum vulgare Contig6968_at Contig6968 - - 8e-19 At3g22830 AT-HSFA6B C.G. S.X.
0.04 2e+0 34 Populus trichocarpa PtpAffx.62584.1.A1_at CV273963 - - 2e+0 At4g22160 unknown protein C.G. S.X.
0.05 7e-3 42 Triticum aestivum TaAffx.12498.2.S1_at BJ259101 - - 4e+0 At5g67260 CYCD3 C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1612093_at CA811490 - - 2e-26 At3g62250 UBQ5 (ubiquitin 5) C.G. S.X.
0.06 7e-4 44 Zea mays Zm.18379.1.A1_at CO522670 hypothetical protein LOC100279886 - 1e+0 At5g61270 PIF7 (PHYTOCHROME-INTERACTING FACTOR7) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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