CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os12g0595000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os12g0595000 AK065252.1 - EXS, C-terminal domain containing protein 3e-13 At5g35730 EXS family protein / ERD1/XPR1/SYG1 family protein S.X. H.G.
0.55 73.7 Os01g0834200 AK100543.1 - The start codon is not identified. 2e-15 At2g28520 VHA-A1 (VACUOLAR PROTON ATPASE A 1) S.X. H.G.
0.26 25.6 Os03g0281600 AK070260.1 - Ca2+-ATPase 1e-63 At1g07670 calcium-transporting ATPase S.X. H.G.
0.23 21.2 Os07g0161000 AK065877.1 - TPR-like domain containing protein 7e-2 At5g21990 tetratricopeptide repeat (TPR)-containing protein S.X. H.G.
0.22 19.4 Os05g0436400 AK120229.1 - Peptidase A22B, minor histocompatibility antigenH13 family protein 2e-32 At2g03120 ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) S.X. H.G.
0.18 13.7 Os04g0600800 9632.m04940 - Conserved hypothetical protein 1e-25 At4g27630 GTG2 (GPCR-TYPE G PROTEIN 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.2 94.9 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
3.1 94.8 GSM262011 Nipponbare, 2 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
2.8 94.3 GSM154954 Leaf_tZ-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
2.8 94.3 GSM159184 Y Leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
2.8 94.3 GSM429984 Rice wild-type panicle rep2 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
2.7 94.1 GSM99879 TCHW P21_ir29 control, biological rep3 GSE4438 Expression data from rice under salinity stress
2.7 94.1 GSM67056 FL478 salt stressed replicate 2 GSE3053 Rice salt expression
2.7 94.1 GSM154953 Leaf_DMSO-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
2.7 94.1 GSM154951 Leaf_DMSO-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
2.7 94.1 GSM173089 Rice MH63 Control3 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-1 40 Os07g0287800 AK108333.1 - Conserved hypothetical protein 7e+0 At5g41400 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 8e-3 44 Os06g0159400 AK101286.1 - U box domain containing protein 2e-1 At1g06160 ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59) C.G. S.X.
0.01 8e-3 44 Os10g0388600 CB634585 - Peptidase C48, SUMO/Sentrin/Ubl1 family protein 5e+0 Atmg01030 - C.G. S.X.
0.01 1e-1 40 Os12g0640500 AK070701.1 - Na+/H+ antiporter-like protein 2e+0 At5g57290 60S acidic ribosomal protein P3 (RPP3B) C.G. S.X.
0.01 5e-1 38 Os06g0606300 9634.m03879 - - 2e-2 At3g42310 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 3e-13 77 Arabidopsis thaliana At5g35730 833549 EXS family protein / ERD1/XPR1/SYG1 family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFPO - - - C.G. S.X.
0.13 1e-19 99 Glycine max GmaAffx.61892.1.S1_at BF716032 - - 2e-40 At5g35730 EXS family protein / ERD1/XPR1/SYG1 family protein C.G. S.X.
0.41 0 670 Hordeum vulgare Contig14948_at Contig14948 - - 1e-4 At5g35730 EXS family protein / ERD1/XPR1/SYG1 family protein C.G. S.X.
0.20 2e-18 95 Populus trichocarpa PtpAffx.222228.1.S1_s_at pmrna39503 predicted small molecule transporter - 9e-22 At5g35730 EXS family protein / ERD1/XPR1/SYG1 family protein C.G. S.X.
0.55 0 1017 Triticum aestivum Ta.10706.1.S1_x_at CK153112 - - 5e-11 At5g35730 EXS family protein / ERD1/XPR1/SYG1 family protein C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1620479_at CD716240 - - 2e-13 At2g29210 splicing factor PWI domain-containing protein C.G. S.X.
0.23 9e-61 234 Zea mays Zm.8183.1.A1_at BM073193 - - 1e+0 At4g17980 anac071 (Arabidopsis NAC domain containing protein 71) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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