CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os12g0586600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 94.6 Os12g0586600 AK100436.1 - Plasma membrane Ca2+-ATPase 2e-59 At2g22950 calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7) S.X. H.G.
0.50 68.0 Os01g0355600 NM_193973.1 - Galactose-binding like domain containing protein 6e-7 At3g59770 SAC9 S.X. H.G.
0.50 68.0 Os03g0833300 AK065741.1 - SBP domain containing protein 1e-4 At2g47070 SPL1 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 1) S.X. H.G.
0.44 58.1 Os10g0575200 AK066761.1 - Protein psi1 (Protein psi) 1e-30 At2g26890 GRV2 (GRAVITROPISM DEFECTIVE 2) S.X. H.G.
0.38 46.9 Os03g0281600 AK070260.1 - Ca2+-ATPase 1e-63 At1g07670 calcium-transporting ATPase S.X. H.G.
0.29 31.1 Os04g0600800 9632.m04940 - Conserved hypothetical protein 1e-25 At4g27630 GTG2 (GPCR-TYPE G PROTEIN 2) S.X. H.G.
0.26 25.6 Os03g0427900 AU078411 - U box domain containing protein 1e-4 At5g15400 U-box domain-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.9 99.0 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
4.8 96.5 GSM357122 14-day-old seedling, rep 1 GSE14275 Expression data for heat shock in rice seedlings
3.8 95.7 GSM357134 14-day-old seedling, rep 3 GSE14275 Expression data for heat shock in rice seedlings
3.1 94.8 GSM375767 gid1-3_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
3.0 94.6 GSM67058 IR29 control replicate 1 GSE3053 Rice salt expression
2.9 94.5 GSM375765 gid1-3_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
2.9 94.5 GSM159197 Inflorescence (P3, 5 - 10 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
2.7 94.1 GSM429983 Rice mutant phoenix (pho) panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
2.7 94.1 GSM195226 Root GSE7951 Genome-wide gene expression profiling of rice stigma
2.7 94.1 GSM159184 Y Leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.53 0 676 Os03g0616400 AK071938.1 - Plasma membrane Ca2+-ATPase 4e-26 At2g22950 calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7) C.G. S.X.
0.27 6e-82 307 Os03g0203700 AK121250.1 - Plasma membrane Ca2+-ATPase 1e-63 At4g37640 ACA2 (CALCIUM ATPASE 2) C.G. S.X.
0.09 1e-15 87 Os11g0140400 9640.m00336 - Calcium-translocating P-type ATPase, PMCA-typefamily protein 2e-24 At3g57330 ACA11 (autoinhibited Ca2+-ATPase 11) C.G. S.X.
0.08 1e-89 333 Os12g0586500 AK107528.1 - - 5e-3 At1g27770 ACA1 (AUTO-INHIBITED CA2+-ATPASE 1) C.G. S.X.
0.07 2e-8 63 Os01g0939100 AK070064.1 - Calmodulin-stimulated calcium-ATPase 2e-16 At3g57330 ACA11 (autoinhibited Ca2+-ATPase 11) C.G. S.X.
0.04 2e-7 59 Os08g0517200 AK058787.1 - Potential calcium-transporting ATPase 9, plasmamembrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 9) 1e-39 At4g29900 ACA10 (AUTOINHIBITED CA(2+)-ATPASE 10) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 2e-59 232 Arabidopsis thaliana At2g22950 816826 calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7) F:calmodulin binding, calcium-transporting ATPase activity;P:calcium ion transport, cation transport, metabolic process, ATP biosynthetic process;C:membrane;BMOFPAV - - - C.G. S.X.
0.31 4e-79 297 Glycine max Gma.1178.1.S1_a_at AF195029.1 plasma membrane Ca2+-ATPase - 2e-74 At1g27770 ACA1 (AUTO-INHIBITED CA2+-ATPASE 1) C.G. S.X.
0.48 0 1667 Hordeum vulgare Contig9357_at Contig9357 - - 2e-42 At1g27770 ACA1 (AUTO-INHIBITED CA2+-ATPASE 1) C.G. S.X.
0.36 3e-80 301 Populus trichocarpa PtpAffx.203064.1.S1_at pmrna6068 autoinhibited calcium ATPase - 3e-82 At4g37640 ACA2 (CALCIUM ATPASE 2) C.G. S.X.
0.19 6e-130 466 Triticum aestivum TaAffx.50789.1.S1_at CA735312 - - 3e-13 At1g27770 ACA1 (AUTO-INHIBITED CA2+-ATPASE 1) C.G. S.X.
0.19 1e-63 244 Vitis vinifera 1613557_at BM436858 - - 4e-66 At4g37640 ACA2 (CALCIUM ATPASE 2) C.G. S.X.
0.07 1e-27 125 Zea mays Zm.8105.1.A1_at BM379418 - - 1e-3 At4g37640 ACA2 (CALCIUM ATPASE 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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