CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os12g0571300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os12g0571300 AK110663.1 - Conserved hypothetical protein 2e+0 At5g10410 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related S.X. H.G.
0.60 79.7 Os06g0140400 AK102692.1 - DNA-binding protein (Homeodomain-leucine zippertranscription factor) 2e-4 At3g60390 HAT3 (HOMEOBOX-LEUCINE ZIPPER PROTEIN 3) S.X. H.G.
0.19 15.1 Os12g0554800 AK105676.1 - Polygalacturonase-like protein 6e-11 At5g49215 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein S.X. H.G.
0.17 12.6 Os05g0430700 AK121485.1 - Protein of unknown function DUF803 family protein 3e-4 At2g21120 unknown protein S.X. H.G.
0.17 12.6 Os09g0452200 AK106042.1 - LysM-domain GPI-anchored protein 1 precursor.Splice isoform 2 3e+0 At2g17705 unknown protein S.X. H.G.
0.14 9.3 Os08g0546900 AU197913 - NC domain containing protein 4e+0 At5g59490 haloacid dehalogenase-like hydrolase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.4 99.0 GSM99875 TCHW P18_agami salt stress, biological rep3 GSE4438 Expression data from rice under salinity stress
12.1 98.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.0 98.3 GSM99864 TCHW P7_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
11.2 98.2 GSM99870 TCHW P13_agami control, biological rep1 GSE4438 Expression data from rice under salinity stress
10.4 98.1 GSM99871 TCHW P14_agami control, biological rep2 GSE4438 Expression data from rice under salinity stress
9.9 98.0 GSM99874 TCHW P17_agami salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
9.4 97.9 GSM99872 TCHW P15_agami control, biological rep3 GSE4438 Expression data from rice under salinity stress
9.1 97.9 GSM99881 TCHW P23_ir29 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
8.3 97.7 GSM99873 TCHW P16_agami salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
7.8 97.6 GSM99858 TCHW P1_m103 control, biological rep1 GSE4438 Expression data from rice under salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 1e-22 109 Os05g0459300 AK119604.1 - Conserved hypothetical protein 4e-1 At5g07520 GRP18 (GLYCINE-RICH PROTEIN 18) C.G. S.X.
0.03 5e-6 54 Os11g0175700 AB071804.1 - The start codon is not identified. 6e-8 At1g35560 TCP family transcription factor, putative C.G. S.X.
0.02 2e-8 61 Os03g0719400 AK120822.1 - Esterase/lipase/thioesterase domain containingprotein 4e-6 At1g73480 hydrolase, alpha/beta fold family protein C.G. S.X.
0.02 5e-6 54 Os12g0493900 AK121028.1 - ARM repeat fold domain containing protein 4e-3 At1g30475 - C.G. S.X.
0.02 2e-5 52 Os01g0587800 NM_192550.1 - - 1e-1 At3g45230 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.02 2e-5 52 Os04g0614600 AF297651.1 - Viroid RNA-binding protein (Fragment) 4e-31 At3g22200 POP2 (POLLEN-PISTIL INCOMPATIBILITY 2) C.G. S.X.
0.01 5e-6 54 Os03g0187100 AK060541.1 - Hypothetical protein 1e+0 At2g40316 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e+0 34 Arabidopsis thaliana At5g10410 830905 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related F:phospholipid binding, binding;P:biological_process unknown;C:cellular_component unknown;POM - - - C.G. S.X.
0.07 2e-4 48 Glycine max GmaAffx.3713.1.S1_at BE822216 - - 3e-5 At3g55420 unknown protein C.G. S.X.
0.07 5e-9 61 Hordeum vulgare EBma01_SQ002_A20_at EBma01_SQ002_A20 - - 2e+0 At3g03870 unknown protein C.G. S.X.
0.02 2e-1 38 Populus trichocarpa PtpAffx.218265.1.S1_at pmrna33817 hypothetical protein - 1e+1 At4g25140 OLEO1 (OLEOSIN 1) C.G. S.X.
0.17 1e-23 111 Triticum aestivum TaAffx.80075.1.S1_at CA703103 - - 4e+0 At5g66380 ATFOLT1 (ARABIDOPSIS THALIANA FOLATE TRANSPORTER 1) C.G. S.X.
0.04 2e-1 36 Vitis vinifera 1606638_at CF518649 hypothetical protein LOC100258699 - 3e-11 At1g51660 ATMKK4 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4) C.G. S.X.
0.46 7e-147 519 Zea mays Zm.8653.1.A1_at BM075070 hypothetical protein LOC100276878 - 5e+0 At2g31335 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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