CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os12g0559200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 73.7 Os12g0559200 BM421235 - Lipoxygenase (EC 1.13.11.12) 2e+0 At5g57750 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.40 51.1 Os12g0247700 AK066682.1 - Beta-glucosidase aggregating factor 2e+0 At4g09650 ATPD (ATP SYNTHASE DELTA-SUBUNIT GENE) S.X. H.G.
0.36 44.0 Os01g0108400 AU096466 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 4e-1 At1g76940 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.15 10.3 Os01g0117600 AK065867.1 - - 3e-4 At3g07070 protein kinase family protein S.X. H.G.
0.15 10.3 Os07g0526400 BI806666 - Chalcone synthase (EC 2.3.1.74)(Naringenin-chalcone synthase) 4e+0 At3g21920 pollen coat receptor kinase, putative S.X. H.G.
0.13 8.2 Os04g0187800 9632.m00967 - Conserved hypothetical protein 3e+0 At5g37290 armadillo/beta-catenin repeat family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
42.4 99.9 GSM255763 antiOsLIC collar chip GSE12097 antiOsLIC collar chip
32.3 99.8 GSM255762 wt collar chip GSE12097 antiOsLIC collar chip
24.3 99.4 GSM421670 XOC, 2 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
22.2 99.3 GSM154959 Leaf_OsRR6-overexpressor_replicate 1 GSE6720 Gene expression in OsRR6-overexpression line
17.5 98.9 GSM421698 XOO, 8 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
16.4 98.8 GSM421706 XOO, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
15.4 98.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.8 98.5 GSM154960 Leaf_OsRR6-overexpressor_replicate 2 GSE6720 Gene expression in OsRR6-overexpression line
13.4 98.5 GSM421705 XOO, 96 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
13.1 98.4 GSM154957 Leaf_control_replicate 1 GSE6720 Gene expression in OsRR6-overexpression line
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.34 0 856 Os12g0560100 9640.m03620 - Lipoxygenase (EC 1.13.11.12) 2e+0 At3g62840 - C.G. S.X.
0.21 3e-43 178 Os02g0194700 AK071915.1 - Plant lipoxygenase family protein 4e-1 At5g66010 RNA binding / nucleic acid binding / nucleotide binding C.G. S.X.
0.18 7e-32 141 Os08g0508800 D14000.1 - Lipoxygenase, chloroplast precursor (EC1.13.11.12) 2e+0 At3g15830 phosphatidic acid phosphatase-related / PAP2-related C.G. S.X.
0.18 7e-32 141 Os08g0509100 AK066825.1 - Lipoxygenase, chloroplast precursor (EC1.13.11.12) 6e+0 At4g14723 - C.G. S.X.
0.08 4e-12 75 Os04g0447100 9632.m03516 - Lipoxygenase 2e-5 At1g72520 lipoxygenase, putative C.G. S.X.
0.06 2e-7 59 Os03g0738600 AK073529.1 - Lipoxygenase L-2 (EC 1.13.11.12) 2e+0 At1g55020 LOX1 C.G. S.X.
0.03 3e+0 34 Os06g0156400 9634.m00550 - Lipolytic enzyme, G-D-S-L family protein 1e+0 At3g02370 unknown protein C.G. S.X.
0.03 3e+0 34 Os06g0325601 NM_195566.1 - - 5e-1 At4g36370 unknown protein C.G. S.X.
0.01 1e-2 42 Os03g0700700 AK072689.1 - Lipoxygenase (EC 1.13.11.12) 3e-5 At3g22400 LOX5 C.G. S.X.
0.01 8e-1 36 Os03g0699700 AB099850.1 - Lipoxygenase (EC 1.13.11.12) (Fragment) 2e-2 At1g55020 LOX1 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 Arabidopsis thaliana At5g57750 835883 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB - - - C.G. S.X.
0.03 8e+0 32 Glycine max PsAffx.CL1225Contig1_at PsAffx.CL1225Contig1 - - 1e+0 At1g18680 HNH endonuclease domain-containing protein C.G. S.X.
0.10 2e-10 65 Hordeum vulgare Contig2306_s_at Contig2306 - - 1e+0 At5g18600 glutaredoxin family protein C.G. S.X.
0.03 8e+0 32 Populus trichocarpa PtpAffx.9843.1.S1_at DN496777 hypothetical protein - 8e-1 Atmg00370 - C.G. S.X.
0.12 2e-6 54 Triticum aestivum TaAffx.97737.1.A1_at CA722456 - - 1e+0 At5g18600 glutaredoxin family protein C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1608626_at CF215511 mildew resistance locus o 15 - 1e+0 At5g04620 ATBIOF (BIOTIN F) C.G. S.X.
0.03 1e+1 30 Zea mays ZmAffx.781.1.A1_at AI746268 - - 1e+1 At4g37450 AGP18 (ARABINOGALACTAN PROTEIN 18) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0022900 A process whereby a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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