CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os12g0555000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 71.3 Os12g0555000 AB127580.1 - Bet v I allergen family protein 6e+0 At5g64310 AGP1 (ARABINOGALACTAN PROTEIN 1) S.X. H.G.
0.80 94.6 Os02g0569900 AK105913.1 - Cytochrome P450 family protein 3e+0 At1g79010 NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY) S.X. H.G.
0.67 87.2 Os02g0570700 AK070167.1 - Cytochrome P450 family protein 6e-5 At3g32047 electron carrier/ heme binding / iron ion binding / monooxygenase S.X. H.G.
0.50 68.0 Os11g0514500 9639.m02864 - Sorghum bicolor leucine-rich repeat-containingextracellular glycoprotein precursor 4e-10 At5g21090 leucine-rich repeat protein, putative S.X. H.G.
0.40 51.1 Os06g0569500 CB618023 - Ent-kaurene oxidase (EC 1.14.13.78) (AtKO1)(Cytochrome P450 701A3) 3e+0 At1g78172 unknown protein S.X. H.G.
0.17 12.6 Os04g0180400 AK071546.1 - Cytochrome P450 CYP99A1 (EC 1.14.-.-) (Fragment) 6e-5 At5g47990 CYP705A5 S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.6 99.1 GSM262020 Nipponbare, 11 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
18.1 98.9 GSM149410 Rice Azucena 1ppm Arsenate Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
17.1 98.8 GSM159209 Seed (S1, 0 - 2 dap), biological rep 3 GSE6893 Expression data for reproductive development in rice
16.3 98.8 GSM357136 14-day-old seedling, heat shock, rep 2 GSE14275 Expression data for heat shock in rice seedlings
15.8 98.7 GSM357137 14-day-old seedling, heat shock, rep 3 GSE14275 Expression data for heat shock in rice seedlings
15.2 98.7 GSM357135 14-day-old seedling, heat shock, rep 1 GSE14275 Expression data for heat shock in rice seedlings
14.7 98.6 GSM159207 Seed (S1, 0 - 2 dap), biological rep 1 GSE6893 Expression data for reproductive development in rice
14.0 98.5 GSM262012 Nipponbare, 2 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
13.1 98.4 GSM262004 IAC165, 4 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
12.2 98.3 GSM159173 Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.41 3e-43 176 Os12g0555500 AK071613.1 - Probenazole-inducible protein PBZ1 4e-1 At5g64310 AGP1 (ARABINOGALACTAN PROTEIN 1) C.G. S.X.
0.37 5e-39 163 Os12g0555200 AK070762.1 - Probenazole-inducible protein PBZ1 2e+0 At2g34530 unknown protein C.G. S.X.
0.02 2e-1 38 Os06g0225200 AK067095.1 - Mitochodrial transcription terminationfactor-related family protein 3e+0 At5g54145 unknown protein C.G. S.X.
0.02 7e-1 36 Os03g0748900 CR284984 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 3e+0 At5g13190 - C.G. S.X.
0.02 7e-1 36 Os06g0224600 BI801365 - Hypothetical protein 6e+0 At5g57310 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e+0 32 Arabidopsis thaliana At5g64310 836552 AGP1 (ARABINOGALACTAN PROTEIN 1) Encodes arabinogalactan-protein (AGP1). - - - C.G. S.X.
0.03 2e+0 34 Glycine max GmaAffx.65796.1.S1_at BM954837 - - 4e+0 At4g30050 unknown protein C.G. S.X.
0.11 2e-1 36 Hordeum vulgare Contig4405_x_at Contig4405 - - 6e+0 At2g18250 ATCOAD (4-phosphopantetheine adenylyltransferase) C.G. S.X.
0.03 8e+0 32 Populus trichocarpa PtpAffx.221335.1.S1_at pmrna38155 hypothetical protein - 1e-2 At1g33980 Smg-4/UPF3 family protein C.G. S.X.
0.10 3e-2 40 Triticum aestivum Ta.22619.1.S1_at CA687670 - - 8e+0 At4g32340 - C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1613113_at CK136925.1 phenylalanine ammonia-lyase - 1e+0 At1g57850 Toll-Interleukin-Resistance (TIR) domain-containing protein C.G. S.X.
0.09 4e-5 48 Zea mays Zm.10175.1.A1_at BM379420 hypothetical protein LOC100279966 /// pathogenesis-related protein 10 - 7e+0 At4g18692 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage