CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os12g0548700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os12g0548700 AK058739.1 - CI2C 1e+0 At4g14805 protease inhibitor/seed storage/lipid transfer protein (LTP)-related S.X. H.G.
0.83 95.8 Os03g0836800 AK061197.1 - Peptidase M20 family protein 9e+0 At5g38900 DSBA oxidoreductase family protein S.X. H.G.
0.80 94.6 Os05g0153300 9633.m00532 - Lipase, class 3 family protein 3e+0 At2g20740 - S.X. H.G.
0.67 87.2 Os06g0705400 AK062667.1 - Nonspecific lipid-transfer protein 2P (LTP2P)(Lipid transfer protein 2 isoform 2) (LTP2-2) (7 kDalipid transfer protein 2) 5e+0 At4g13480 AtMYB79 (myb domain protein 79) S.X. H.G.
0.53 71.3 Os01g0348800 AK062553.1 - Salt-stress induced protein (Salt protein) 1e+0 At5g58570 unknown protein S.X. H.G.
0.35 41.7 Os03g0738600 AK073529.1 - Lipoxygenase L-2 (EC 1.13.11.12) 2e+0 At1g55020 LOX1 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
179.2 100.0 GSM159172 Rice coleoptiles, 4 days old, aerobic, replicate N.1 (sample#9) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
119.0 100.0 GSM159173 Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
14.7 98.6 GSM262010 Nipponbare, 2 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
12.5 98.3 GSM195228 Embryo GSE7951 Genome-wide gene expression profiling of rice stigma
12.1 98.3 GSM262012 Nipponbare, 2 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
12.1 98.3 GSM262017 Nipponbare, 4 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
11.7 98.2 GSM262013 Nipponbare, 2 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
8.2 97.7 GSM262011 Nipponbare, 2 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
6.8 97.3 GSM431931 Root- -Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
5.7 96.9 GSM431932 Root- -Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 8e-3 42 Os06g0192300 9634.m00877 - - 3e-1 At1g64340 unknown protein C.G. S.X.
0.05 1e-1 38 Os02g0129800 AK109213.1 - Conserved hypothetical protein 3e-1 At1g58150 unknown protein C.G. S.X.
0.03 2e-3 44 Os03g0111200 AK060379.1 - Remorin 5e-1 At1g60989 SCRL7 (SCR-Like 7) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Arabidopsis thaliana At4g14805 827136 protease inhibitor/seed storage/lipid transfer protein (LTP)-related F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PMFO - - - C.G. S.X.
0.03 4e-1 36 Glycine max HgAffx.21607.1.S1_at CB299497 - - 5e+0 At5g16200 50S ribosomal protein-related C.G. S.X.
0.27 9e-18 89 Hordeum vulgare Contig50_x_at Contig50 - - 3e+0 At5g44610 MAP18 (Microtubule-associated Protein 18) C.G. S.X.
0.05 1e+0 34 Populus trichocarpa PtpAffx.207593.1.S1_at pmrna15069 hypothetical protein - 2e-2 At4g13850 GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2) C.G. S.X.
0.28 9e-23 107 Triticum aestivum TaAffx.113766.1.S1_at CA605482 - - 1e+1 At5g35737 unknown protein C.G. S.X.
0.04 3e-1 34 Vitis vinifera 1609125_at CF373253 hypothetical protein LOC100250703 - 3e-10 At4g15000 60S ribosomal protein L27 (RPL27C) C.G. S.X.
0.21 4e-23 107 Zea mays Zm.301.1.A1_a_at BM334689 subtilisin-chymotrypsin inhibitor CI-1B /// subtilisin-chymotrypsin inhibitor homolog1 - 2e+1 Atcg01270 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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