Gene omics information

Query gene ID	Os12g0520200
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.9	Os12g0520200	CB675503	-	Phenylalanine ammonia-lyase (EC 4.3.1.5)(Fragment)	2e-5	At3g53260	PAL2	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.19	15.1	Os02g0764500	AK066291.1	-	Lhca5 protein	8e-3	At1g45474	LHCA5	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.19	15.1	Os05g0291700	AK108453.1	-	Conserved hypothetical protein	7e-1	At1g79810	TED3 (REVERSAL OF THE DET PHENOTYPE 3)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.13	8.2	Os06g0196300	AK059845.1	-	Peroxiredoxin Q	9e-12	At3g26060	ATPRX Q	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.10	5.7	Os03g0782200	AK069119.1	-	Conserved hypothetical protein	1e+1	At5g53588	CPuORF50 (Conserved peptide upstream open reading frame 50)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	2.0	Os11g0595200	AK106159.1	-	PAP fibrillin family protein	4e-2	At3g23400	plastid-lipid associated protein PAP / fibrillin family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.3	98.6	GSM421707	MOCK, 2 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
13.7	98.5	GSM421688	XOO, 2 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
12.1	98.3	GSM421667	XOC, 2 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
11.6	98.2	GSM421687	XOO, 2 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
11.1	98.2	GSM421668	XOC, 2 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.9	98.1	GSM421689	XOO, 2 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.8	98.1	GSM421712	MOCK, 4 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.4	98.1	GSM421692	XOO, 4 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.4	98.1	GSM421671	XOC, 4 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.4	98.1	GSM421669	XOC, 2 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.56	0	1011	Os02g0626400	BI807677	-	Phenylalanine ammonia-lyase (EC 4.3.1.5)	1e-19	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	0	862	Os04g0518400	AK067801.1	-	Phenylalanine ammonia-lyase 2 (EC 4.3.1.5)	4e-22	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	0	799	Os02g0627100	AK068993.1	-	Phenylalanine ammonia-lyase (EC 4.3.1.5)	1e-19	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.42	0	757	Os02g0626100	AK121303.1	-	Phenylalanine ammonia-lyase (EC 4.3.1.5)	4e+0	At2g03430	ankyrin repeat family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.40	6e-90	333	Os04g0518100	AK100346.1	-	Phenylalanine ammonia-lyase	2e-11	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	2e-5	52	Arabidopsis thaliana	At3g53260	824493	PAL2	Encodes phenylalanine lyase.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e-5	52	Glycine max	Gma.2266.1.S1_s_at	BG839284	-	-	2e-48	At2g37040	pal1 (Phe ammonia lyase 1)	C.G.	S.X.	Please select
0.49	4e-162	571	Hordeum vulgare	Contig1797_x_at	Contig1797	-	-	1e-19	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select
0.04	9e-5	50	Populus trichocarpa	Ptp.4730.1.A1_s_at	CV267232	-	-	1e-10	At3g53260	PAL2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.47	0	648	Triticum aestivum	Ta.28736.1.S1_at	AY005474.1	inducible phenylalanine ammonia-lyase	-	3e-14	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select
0.03	1e+0	34	Vitis vinifera	1619642_at	CF512453	hypothetical protein LOC100241575	-	3e-28	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select
0.56	1e-121	436	Zea mays	Zm.15903.3.A1_at	AY104679.1	hypothetical protein LOC100273579	-	4e-12	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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