Gene omics information

Query gene ID	Os12g0499200
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	68.0	Os12g0499200	9640.m03053	-	Hypothetical protein	3e-3	At5g19260	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.47	62.3	Os11g0272500	9639.m01589	-	-	6e+0	At5g67110	ALC (ALCATRAZ)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.46	60.9	Os04g0371800	9632.m02876	-	-	2e+0	At2g43371	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.42	53.9	Os04g0648400	9632.m05398	-	Leucine-rich repeat, typical subtype containingprotein	1e+0	At5g41050	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.40	51.1	Os11g0224900	9639.m01122	-	NBS-LRR-like protein	2e+0	At1g33940	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.40	51.1	Os11g0597700	AK067694.1	-	Hypothetical protein	2e-2	At2g02290	NLI interacting factor (NIF) family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
105.4	100.0	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
45.3	99.9	GSM357122	14-day-old seedling, rep 1	GSE14275	Expression data for heat shock in rice seedlings
43.9	99.9	GSM357134	14-day-old seedling, rep 3	GSE14275	Expression data for heat shock in rice seedlings
28.4	99.6	GSM357133	14-day-old seedling, rep 2	GSE14275	Expression data for heat shock in rice seedlings
17.1	98.8	GSM357137	14-day-old seedling, heat shock, rep 3	GSE14275	Expression data for heat shock in rice seedlings
15.7	98.7	GSM357135	14-day-old seedling, heat shock, rep 1	GSE14275	Expression data for heat shock in rice seedlings
15.3	98.7	GSM357136	14-day-old seedling, heat shock, rep 2	GSE14275	Expression data for heat shock in rice seedlings
11.8	98.3	GSM375767	gid1-3_ shoot_replicate 3	GSE15046	Transcriptome analysis of gibberellin-signaling mutants in rice
10.7	98.1	GSM375648	Taichung 65_shoot_replicate 2	GSE15046	Transcriptome analysis of gibberellin-signaling mutants in rice
9.7	98.0	GSM375765	gid1-3_ shoot_replicate 1	GSE15046	Transcriptome analysis of gibberellin-signaling mutants in rice

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	8e-8	59	Os11g0667200	9639.m04129	-	-	2e+0	At5g06650	GIS2 (GLABROUS INFLORESCENCE STEMS 2)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.06	2e-18	95	Os06g0151700	AK106925.1	-	-	1e-2	At3g55950	CCR3 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 3)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.06	2e-18	95	Os06g0151800	AK109679.1	-	Hypothetical protein	2e-2	At3g55950	CCR3 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 3)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	8e-8	59	Os11g0666200	9639.m04120	-	Protein kinase domain containing protein	8e-1	At5g50430	UBC33 (ubiquitin-conjugating enzyme 33)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-3	44	Arabidopsis thaliana	At5g19260	832046	unknown protein	F:unknown;P:unknown;C:unknown;MOFPBV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-2	40	Glycine max	PsAffx.psHB022xF10f_at	PsAffx.psHB022xF10f	-	-	4e+0	At5g61050	histone deacetylase-related / HD-related	C.G.	S.X.	Please select
0.03	3e-1	36	Hordeum vulgare	Contig4107_x_at	Contig4107	-	-	2e-1	At1g14450	unknown protein	C.G.	S.X.	Please select
0.03	9e-4	46	Populus trichocarpa	PtpAffx.224051.1.S1_x_at	pmrna42286	hypothetical protein	-	6e-1	At3g46900	COPT2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	7e-10	65	Triticum aestivum	TaAffx.25368.1.S1_at	CA701390	-	-	1e+0	At1g15230	unknown protein	C.G.	S.X.	Please select
0.03	8e-4	44	Vitis vinifera	1616417_at	CB975222	hypothetical protein LOC100257171	-	2e-2	At4g21610	LOL2 (LSD ONE LIKE 2)	C.G.	S.X.	Please select
0.02	1e+0	34	Zea mays	Zm.9415.2.A1_at	BM348481	-	-	7e-2	At5g01075	beta-galactosidase	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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