Gene omics information

Query gene ID	Os12g0493900
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.89	96.9	Os12g0493900	AK121028.1	-	ARM repeat fold domain containing protein	4e-3	At1g30475	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.91	98.9	Os07g0489800	AK068191.1	-	Ferredoxin domain containing protein	5e-1	At3g16250	NDF4 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.83	95.8	Os04g0119000	AK120328.1	-	Conserved hypothetical protein	2e+0	At3g17710	F-box family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.81	94.8	Os02g0578400	9630.m03520	-	Photosystem II oxygen evolving complex proteinPsbQ family protein	4e-7	At1g14150	oxygen evolving enhancer 3 (PsbQ) family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.73	91.1	Os07g0105600	AK068377.1	-	Photosystem II oxygen evolving complex proteinPsbQ family protein	1e-1	At5g56840	DNA-binding family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.73	91.1	Os02g0773500	AK062694.1	-	Conserved hypothetical protein	1e-3	At5g56950	NAP1	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.69	87.9	Os03g0708500	9631.m04889	-	Viral coat and capsid protein family protein	7e-3	At1g73655	FK506 binding / peptidyl-prolyl cis-trans isomerase	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.59	78.0	Os03g0748300	AK068519.1	-	Galactose mutarotase-like domain containingprotein	5e-2	At3g15780	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.55	73.7	Os01g0676200	AK070436.1	-	Conserved hypothetical protein	2e+0	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.51	68.7	Os08g0425200	AK099569.1	-	Conserved hypothetical protein	1e-1	At4g11870	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
24.7	99.4	GSM207565	Mudanjiang8 wild type control rep1	GSE8380	Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
23.3	99.4	GSM207566	Mudanjiang8 wild type control rep2	GSE8380	Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
22.8	99.3	GSM207563	Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep2	GSE8380	Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
22.7	99.3	GSM207560	Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep3	GSE8380	Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
22.0	99.3	GSM207559	Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep2	GSE8380	Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
21.8	99.2	GSM421678	XOC, 8 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
20.1	99.1	GSM207564	Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep3	GSE8380	Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
19.5	99.1	GSM207558	Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep1	GSE8380	Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
19.1	99.0	GSM421718	MOCK, 8 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
17.1	98.8	GSM421717	MOCK, 8 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	8e-6	54	Os12g0571300	AK110663.1	-	Conserved hypothetical protein	2e+0	At5g10410	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	5e-4	48	Os05g0121900	9633.m00226	-	Phosphate/phosphoenolpyruvate translocatorprotein-like	8e-7	At5g04160	phosphate translocator-related	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	5e-4	48	Os12g0189700	9640.m00817	-	TPR-like domain containing protein	6e-1	At3g11820	SYP121 (SYNTAXIN OF PLANTS 121)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	5e-4	48	Os06g0574000	9634.m03586	-	-	2e+0	At1g22680	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e-4	50	Os06g0607100	AK071250.1	-	Conserved hypothetical protein	4e-8	At3g15820	phosphatidic acid phosphatase-related / PAP2-related	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-3	44	Arabidopsis thaliana	At1g30475	2745766	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	9e-2	40	Glycine max	Gma.13265.1.S1_at	CD397652	-	-	7e-6	At3g27750	-	C.G.	S.X.	Please select
0.50	0	648	Hordeum vulgare	Contig13673_at	Contig13673	-	-	5e-4	At2g29200	APUM1 (Arabidopsis Pumilio 1)	C.G.	S.X.	Please select
0.02	2e-2	42	Populus trichocarpa	PtpAffx.200833.1.S1_x_at	pmrna1624	hypothetical protein	-	1e-3	At1g26250	proline-rich extensin, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.34	4e-102	373	Triticum aestivum	Ta.26051.1.A1_at	CK215729	-	-	2e+0	At5g22860	serine carboxypeptidase S28 family protein	C.G.	S.X.	Please select
0.02	5e-3	42	Vitis vinifera	1618318_at	CF609544	hypothetical protein LOC100266352	-	2e-12	At1g22240	APUM8 (Arabidopsis Pumilio 8)	C.G.	S.X.	Please select
0.03	1e-1	38	Zea mays	Zm.8514.1.S1_at	AY104758.1	-	-	5e+0	At5g35525	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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