CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os12g0485300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 82.7 Os12g0485300 AK064188.1 - Hypothetical protein 3e-1 At4g13850 GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2) S.X. H.G.
0.25 24.1 Os07g0287100 AK066004.1 - TPR-like domain containing protein 8e-5 At1g78915 binding S.X. H.G.
0.10 5.7 Os09g0515400 AK103734.1 - Conserved hypothetical protein 2e+0 At1g80700 unknown protein S.X. H.G.
0.04 2.0 Os06g0103600 AK072800.1 - Aminoacyl-t-RNA synthetase precursor 8e-46 At3g48110 EDD1 (EMBRYO-DEFECTIVE-DEVELOPMENT 1) S.X. H.G.
0.04 2.0 Os05g0193800 AK067940.1 - Conserved hypothetical protein 2e+0 At1g70120 unknown protein S.X. H.G.
0.01 0.5 Os05g0544900 AK109267.1 - Hypothetical protein 5e-1 At4g23770 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.6 99.1 GSM159185 Y Leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
15.6 98.7 GSM159261 7-day-old Seedling, biological rep 3 GSE6901 Expression data for stress treatment in rice seedlings
15.3 98.7 GSM159259 7-day-old Seedling, biological rep 1 GSE6901 Expression data for stress treatment in rice seedlings
11.4 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM159260 7-day-old Seedling, biological rep 2 GSE6901 Expression data for stress treatment in rice seedlings
10.6 98.1 GSM159183 Y Leaf, biological rep 1 GSE6893 Expression data for reproductive development in rice
9.0 97.8 GSM159180 Mature leaf, biological rep 1 GSE6893 Expression data for reproductive development in rice
8.7 97.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM159265 Salt stress, biological rep 1 GSE6901 Expression data for stress treatment in rice seedlings
8.4 97.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 6e-1 36 Os10g0451601 9638.m02711 - - 4e-3 At1g30475 - C.G. S.X.
0.03 6e-1 36 Os04g0475200 9632.m03792 - - 1e-1 At3g44950 glycine-rich protein C.G. S.X.
0.02 2e-1 38 Os02g0701600 AK071763.1 - Tocopherol O-methyltransferase, chloroplastprecursor (EC 2.1.1.95) (Gamma-tocopherolmethyltransferase) 3e-6 At1g64970 G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE) C.G. S.X.
0.02 6e-1 36 Os05g0369500 AK070770.1 - Conserved hypothetical protein 4e+0 At5g02810 PRR7 (PSEUDO-RESPONSE REGULATOR 7) C.G. S.X.
0.01 2e+0 34 Os06g0638500 9634.m04167 - Protein kinase domain containing protein 3e-4 At1g25540 PFT1 (PHYTOCHROME AND FLOWERING TIME 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-1 36 Arabidopsis thaliana At4g13850 827019 GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2) Encodes a glycine-rich RNA-binding protein. Gene expression is induced by cold. - - - C.G. S.X.
0.03 7e+0 32 Glycine max PsAffx.psZO011iD01r_s_at PsAffx.psZO011iD01r - - 7e-2 At1g49720 ABF1 (ABSCISIC ACID RESPONSIVE ELEMENT-BINDING FACTOR 1) C.G. S.X.
0.03 6e-1 34 Hordeum vulgare EBem05_SQ003_E07_at EBem05_SQ003_E07 - - 5e-2 At1g27710 glycine-rich protein C.G. S.X.
0.04 4e-1 36 Populus trichocarpa PtpAffx.203128.1.S1_at pmrna6204 hypothetical protein - 2e-1 At1g62240 unknown protein C.G. S.X.
0.03 5e+0 32 Triticum aestivum TaAffx.98966.1.S1_at CA631776 - - 2e-2 At5g64460 - C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1620986_at CF372684 - - 2e-2 At2g31957 LCR75 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 75) C.G. S.X.
0.03 2e+0 32 Zea mays Zm.15877.1.A1_x_at BM339646 IDP2581 protein - 1e+1 At3g62990 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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