CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os12g0458100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 68.0 Os12g0458100 AK065433.1 - Transferase family protein 4e+0 At1g18790 RWP-RK domain-containing protein S.X. H.G.
0.40 51.1 Os12g0247700 AK066682.1 - Beta-glucosidase aggregating factor 2e+0 At4g09650 ATPD (ATP SYNTHASE DELTA-SUBUNIT GENE) S.X. H.G.
0.36 44.0 Os08g0168000 AK108761.1 - Terpene synthase, metal-binding domain containingprotein 8e-1 At5g52190 sugar isomerase (SIS) domain-containing protein S.X. H.G.
0.36 44.0 Os01g0108400 AU096466 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 4e-1 At1g76940 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.07 3.7 Os08g0167800 CB621159 - Terpene synthase-like domain containing protein 2e+0 At2g20630 protein phosphatase 2C, putative / PP2C, putative S.X. H.G.
0.03 1.4 Os03g0650200 9631.m04325 - Cytochrome P450 family protein 9e-1 At5g63400 ADK1 (ADENYLATE KINASE 1) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
72.6 99.9 GSM421706 XOO, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
41.5 99.9 GSM421670 XOC, 2 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
23.5 99.4 GSM375772 gid2-1_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
22.2 99.3 GSM375769 gid2-1_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
20.1 99.1 GSM375770 gid2-1_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
16.7 98.8 GSM154959 Leaf_OsRR6-overexpressor_replicate 1 GSE6720 Gene expression in OsRR6-overexpression line
14.4 98.6 GSM421726 MOCK, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
13.7 98.5 GSM281583 Rice Zhonghua11, biological rep1 GSE11175 Comparison of transcriptome profile between wild-type and dst mutant plants
13.1 98.4 GSM421705 XOO, 96 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
11.5 98.2 GSM421703 XOO, 96 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 8e-10 65 Os07g0421600 9635.m02286 - - 7e-1 At4g38740 ROC1 (ROTAMASE CYP 1) C.G. S.X.
0.12 1e-11 71 Os10g0195600 AK100207.1 - Transferase family protein 4e+0 At2g42380 bZIP transcription factor family protein C.G. S.X.
0.09 2e-7 57 Os05g0155800 9633.m00559 - - 2e-1 At5g39760 AtHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23) C.G. S.X.
0.08 8e-7 56 Os10g0106750 NM_194527.1 - - 1e+1 At5g24105 AGP41 (ARABINOGALACTAN-PROTEIN 41) C.G. S.X.
0.07 5e-8 59 Os10g0106300 9638.m00073 - - 1e+1 At4g24050 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 4e+0 34 Arabidopsis thaliana At1g18790 838461 RWP-RK domain-containing protein F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMOB - - - C.G. S.X.
0.01 1e+0 36 Glycine max Gma.7864.1.S1_a_at BQ611662 - - 1e+0 At5g47320 RPS19 (RIBOSOMAL PROTEIN S19) C.G. S.X.
0.01 4e-1 36 Hordeum vulgare rbaal2j07_at rbaal2j07 - - 5e+0 At5g03850 40S ribosomal protein S28 (RPS28B) C.G. S.X.
0.01 3e-1 38 Populus trichocarpa PtpAffx.209541.1.S1_x_at pmrna18906 hypothetical protein - 8e-2 At4g28270 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.06 1e-2 42 Triticum aestivum Ta.26146.1.S1_at CD452984 - - 2e+0 At1g06540 unknown protein C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1615353_at CB973179 - - 4e-12 At4g04614 unknown protein C.G. S.X.
0.01 4e-1 36 Zea mays Zm.4881.1.A1_at CA404148 High mobility group protein3 - 6e-1 At2g19385 zinc ion binding C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage