CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os12g0438300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.42 53.9 Os12g0438300 AK067669.1 - Disease resistance protein family protein 3e+0 At3g60090 VQ motif-containing protein S.X. H.G.
0.46 60.9 Os04g0295500 AK065384.1 - Conserved hypothetical protein 4e-1 At1g65040 protein binding / zinc ion binding S.X. H.G.
0.46 60.9 Os06g0635200 AK068319.1 - Hypothetical protein 2e-5 At4g22270 unknown protein S.X. H.G.
0.40 51.1 Os02g0178000 AK111625.1 - SNF1 related protein kinase-like protein 6e-11 At1g01140 CIPK9 (CBL-INTERACTING PROTEIN KINASE 9) S.X. H.G.
0.30 32.7 Os08g0113500 AK071052.1 - No apical meristem (NAM) protein family protein 1e-3 At2g02450 ANAC035 (Arabidopsis NAC domain containing protein 35) S.X. H.G.
0.29 31.1 Os04g0509400 9632.m04122 - Protein of unknown function DUF861 family protein 4e+0 At5g46230 unknown protein S.X. H.G.
0.23 21.2 Os11g0208900 AK111797.1 - Leucine rich repeat containing protein kinase 5e-1 At2g17220 protein kinase, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.8 98.5 GSM154951 Leaf_DMSO-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
12.5 98.3 GSM267998 Yellow leaves in F9Y RILs from parents lines GSE10872 Molecular characterization and genetic analysis reveal SA0420 as an early senescing rice mutant with pleotropic
11.9 98.3 GSM154953 Leaf_DMSO-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
11.7 98.2 GSM154952 Leaf_DMSO-treatment_120min_replicate 2 GSE6719 Cytokinin responsive genes in rice
10.4 98.1 GSM154945 Leaf_DMSO-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
9.5 97.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.3 97.7 GSM154947 Leaf_DMSO-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
8.0 97.6 GSM255763 antiOsLIC collar chip GSE12097 antiOsLIC collar chip
7.4 97.5 GSM154946 Leaf_DMSO-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
7.0 97.4 GSM174885 B FR13 3 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 7e-3 44 Os07g0117800 NM_194165.1 - NB-ARC domain containing protein 7e-1 At3g04940 CYSD1 (CYSTEINE SYNTHASE D1) C.G. S.X.
0.03 2e-3 46 Os02g0199000 9630.m00977 - - 3e+0 At5g08180 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein C.G. S.X.
0.01 7e-3 44 Os01g0721200 NM_191808.1 - - 9e-1 At3g30210 MYB121 (MYB DOMAIN PROTEIN 121) C.G. S.X.
0.01 1e-1 40 Os07g0117600 9635.m00169 - - 4e-1 At2g17780 MCA2 (mid1-complementing activity 2) C.G. S.X.
0.01 4e-1 38 Os07g0118000 9635.m00174 - NB-ARC domain containing protein 7e-1 At3g04940 CYSD1 (CYSTEINE SYNTHASE D1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 3e+0 34 Arabidopsis thaliana At3g60090 825179 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.02 8e-2 40 Glycine max GmaAffx.71789.1.S1_at AW201023 - - 2e-5 At4g11970 YT521-B-like family protein C.G. S.X.
0.08 5e-7 56 Hordeum vulgare Contig20455_at Contig20455 - - 2e+0 At5g48220 indole-3-glycerol phosphate synthase, putative C.G. S.X.
0.01 5e+0 34 Populus trichocarpa PtpAffx.5104.1.A1_at CV261488 - - 2e-2 At1g51090 heavy-metal-associated domain-containing protein C.G. S.X.
0.02 2e-1 38 Triticum aestivum TaAffx.64940.1.S1_at BJ269145 - - 1e+0 At2g07689 NADH-ubiquinone oxidoreductase, putative C.G. S.X.
0.02 7e-2 38 Vitis vinifera 1621383_at CD718971 - - 9e-8 At2g45070 SEC61 BETA C.G. S.X.
0.01 1e-1 38 Zea mays Zm.1364.1.A1_at AW927470 structural constituent of ribosome - 6e-3 At5g27820 ribosomal protein L18 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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