CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os12g0431300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os12g0431300 AK110931.1 - Quinoprotein amine dehydrogenase, beta chain-likedomain containing protein 3e-1 At1g49110 unknown protein S.X. H.G.
0.44 58.1 Os08g0158400 9636.m00552 - - 1e-2 At2g34790 MEE23 (MATERNAL EFFECT EMBRYO ARREST 23) S.X. H.G.
0.40 51.1 Os10g0439200 9638.m02604 - Alpha-expansin OsEXPA25 1e-4 At2g37640 EXP3 S.X. H.G.
0.27 27.5 Os01g0641800 9629.m04342 - AAA ATPase, central region domain containingprotein 5e-2 At3g55460 SCL30 S.X. H.G.
0.23 21.2 Os05g0524500 AK073571.1 - Protein kinase domain containing protein 1e-4 At5g47070 protein kinase, putative S.X. H.G.
0.14 9.3 Os02g0770500 9630.m05243 - WRKY transcription factor 32 3e-4 At5g22790 RER1 (RETICULATA-RELATED 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
27.4 99.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.6 99.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.2 99.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.9 99.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.0 99.0 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.0 99.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.5 99.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.4 99.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.3 98.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.3 98.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.37 1e-33 147 Os03g0403400 AK111515.1 - TolB, C-terminal domain containing protein 3e-1 At1g49110 unknown protein C.G. S.X.
0.21 1e-11 73 Os03g0314500 AK065474.1 - Quinonprotein alcohol dehydrogenase-like domaincontaining protein 1e+0 At1g13860 dehydration-responsive protein-related C.G. S.X.
0.03 7e-4 48 Os03g0840200 AK067797.1 - TolB, C-terminal domain containing protein 1e-3 At1g21680 - C.G. S.X.
0.03 1e-2 44 Os09g0396900 AK071589.1 - Protein of unknown function DUF125 family protein 2e-3 At2g01770 VIT1 (vacuolar iron transporter 1) C.G. S.X.
0.02 1e-5 54 Os06g0313800 9634.m02037 - - 6e-1 At3g15340 PPI2 (proton pump interactor 2) C.G. S.X.
0.01 7e-7 57 Os09g0300800 AK063465.1 - Plant protein of unknown function family protein 6e-2 At1g22370 AtUGT85A5 (UDP-glucosyl transferase 85A5) C.G. S.X.
0.01 4e-2 42 Os04g0463300 AK119417.1 - Pentatricopeptide repeat containing protein 7e-3 At1g09680 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.01 4e-2 42 Os06g0217300 AY345223.2 - Transcription factor MADS55 6e-3 At2g22540 SVP (SHORT VEGETATIVE PHASE) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 3e-1 38 Arabidopsis thaliana At1g49110 841334 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.01 5e-1 38 Glycine max GmaAffx.71564.1.S1_at AW831424 - - 4e+0 At3g11050 ATFER2 (ferritin 2) C.G. S.X.
0.45 5e-91 335 Hordeum vulgare Contig6005_x_at Contig6005 - - 3e-1 At1g20130 hydrolase, acting on ester bonds / lipase/ structural constituent of cell wall C.G. S.X.
0.01 2e+0 36 Populus trichocarpa PtpAffx.159365.1.A1_at CV275908 - - 3e-4 At3g48930 EMB1080 (embryo defective 1080) C.G. S.X.
0.45 4e-84 313 Triticum aestivum Ta.14459.1.S1_x_at BJ218617 - - 5e+0 At2g21070 FIO1 (FIONA1) C.G. S.X.
0.01 1e-1 38 Vitis vinifera 1612528_at CB982094 - - 2e-12 At5g24530 DMR6 (DOWNY MILDEW RESISTANT 6) C.G. S.X.
0.01 6e-1 36 Zea mays Zm.6671.3.S1_at CO519752 hypothetical protein LOC100273935 - 2e-3 At1g02335 GL22 (GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR.) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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