Gene omics information

Query gene ID Os12g0420400
Gene name
Organism Oryza sativa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9599.6Os12g0420400BM420353-Photosystem I reaction center subunit XI,chloroplast precursor (PSI- L) (PSI subunit V)4e+0At4g12800PSAL (photosystem I subunit L)S.X.H.G.
0.3745.0Os05g0480000AK061052.1-Cell division protein kinase 4 (EC 2.7.1.37)(Cyclin-dependent kinase 4) (PSK-J3) (CRK3)1e-8At5g01920STN8S.X.H.G.
0.3134.5Os07g0562700AK119545.1-Type III chlorophyll a/b-binding protein(Fragment)3e-9At5g54270LHCB3 (LIGHT-HARVESTING CHLOROPHYLL B-BINDING PROTEIN 3)S.X.H.G.
0.2727.5Os10g0100300AK065110.1-Conserved hypothetical protein2e-1At3g18800unknown proteinS.X.H.G.
0.2219.4Os11g0242800AK098872.1-Chlorophyll A-B binding protein family protein2e-10At4g10340LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5)S.X.H.G.
0.1813.7Os03g0363500AK062124.1-Sugar transporter-like protein5e-10At5g18840sugar transporter, putativeS.X.H.G.
0.1611.3Os01g0501800AK119188.1-Oxygen-evolving enhancer protein 1, chloroplastprecursor (OEE1) (33 kDa subunit of oxygen evolvingsystem of photosystem II) (OEC 33 kDa subunit) (33 kDathylakoid membrane protein)2e-16At3g50820PSBO2 (PHOTOSYSTEM II SUBUNIT O-2)S.X.H.G.
0.149.3Os05g0419000AK067277.1-Alpha/beta hydrolase family protein2e-1At5g38520hydrolase, alpha/beta fold family proteinS.X.H.G.
0.127.2Os06g0729000AK059535.1-Phytoene synthase (EC 2.5.1.-)1e-6At5g17230phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferaseS.X.H.G.
0.127.2Os06g0564500AF073696.1-Cysteine synthase (EC 4.2.99.8)8e-1At5g28020CYSD2 (CYSTEINE SYNTHASE D2)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
50.199.9GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in Musa
12.398.3GSM421694XOO, 4 hai - rep4GSE16793Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
7.897.6GSM421674XOC, 4 hai - rep4GSE16793Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
7.597.5GSM421714MOCK, 4 hai - rep4GSE16793Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
7.097.4GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in Musa
6.597.2GSM421702XOO, 24 hai - rep4GSE16793Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
6.597.2GSM174884E mock 4 dpi rep 1 with array type rice from AffymetrixGSE7256Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
6.297.1GSM421718MOCK, 8 hai - rep4GSE16793Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
5.997.0GSM267999Green leaves in F9G RILs from parents linesGSE10872Molecular characterization and genetic analysis reveal SA0420 as an early senescing rice mutant with pleotropic
5.997.0GSM421701XOO, 24 hai - rep3GSE16793Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.031e-138Os04g04651009632.m03698-Haem peroxidase, plant/fungal/bacterial familyprotein1e-4At5g40150peroxidase, putativeC.G.S.X.
0.021e-138Os08g0564000AK119787.1-Phosphate transporter 61e-12At5g43360PHT3 (PHOSPHATE TRANSPORTER 3)C.G.S.X.
0.024e-136Os10g04688009638.m02883-Leucine-rich repeat, typical subtype containingprotein8e-1At2g32680AtRLP23 (Receptor Like Protein 23)C.G.S.X.
0.011e-138Os03g0388500CR289164-Anther ethylene-upregulated protein ER1 (Fragment)1e-1At5g09410EICBP.B (ETHYLENE INDUCED CALMODULIN BINDING PROTEIN)C.G.S.X.
0.011e-138Os06g0614000AK073403.1-C2 domain containing protein2e-5At5g12970C2 domain-containing proteinC.G.S.X.
0.011e-138Os08g0300300AK066375.1-C1C-Nt1 protein1e+0At5g66815unknown proteinC.G.S.X.
0.014e-136Os02g0770600AK101234.1-Conserved hypothetical protein3e-2At3g25910zinc ion bindingC.G.S.X.
0.014e-136Os03g0749300AK065044.1-Exoglucanase precursor3e-8At5g20950glycosyl hydrolase family 3 proteinC.G.S.X.
0.014e-136Os06g0116100CB683800-Serine/threonine-protein kinase MAK (EC 2.7.1.37)(Male germ cell- associated kinase)9e-17At5g45430protein kinase, putativeC.G.S.X.
0.012e+034Os01g0819000AK102393.1-Conserved hypothetical protein1e+0At5g48470unknown proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.044e+032Arabidopsis thalianaAt4g12800826892PSAL (photosystem I subunit L)Encodes subunit L of photosystem I reaction center.---C.G.S.X.
0.041e+034Glycine maxPsAffx.CL730Contig1_atPsAffx.CL730Contig1--4e+0At5g37260RVE2 (REVEILLE 2)C.G.S.X.
0.103e-1167Hordeum vulgareContig2177_atContig2177--6e-10At4g12800PSAL (photosystem I subunit L)C.G.S.X.
0.035e+032Populus trichocarpaPtpAffx.216461.1.S1_atpmrna31242hypothetical protein-4e+0At3g26520TIP2 (TONOPLAST INTRINSIC PROTEIN 2)C.G.S.X.
0.251e-21103Triticum aestivumTa.27751.3.S1_atCK211496--4e-10At4g12800PSAL (photosystem I subunit L)C.G.S.X.
0.047e-236Vitis vinifera1606960_s_atCF609090hypothetical protein LOC100256095-8e-1At2g06555unknown proteinC.G.S.X.
0.141e-31135Zea maysZm.16853.1.A1_atAY103985.1--2e-18At5g05920DHS (DEOXYHYPUSINE SYNTHASE)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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