CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os12g0420200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 91.1 Os12g0420200 CB652532 - 38 kDa ribosome-associated protein 1e+0 At1g31250 proline-rich family protein S.X. H.G.
0.86 96.4 Os08g0162600 AK060121.1 - Rubredoxin-type Fe(Cys)4 protein family protein 6e-22 At5g17170 ENH1 (enhancer of sos3-1) S.X. H.G.
0.80 94.6 Os08g0553800 AK065711.1 - Isoflavone reductase family protein 1e-25 At4g35250 vestitone reductase-related S.X. H.G.
0.80 94.6 Os01g0912700 AK068528.1 - Conserved hypothetical protein 1e-1 At2g01340 unknown protein S.X. H.G.
0.75 91.9 Os02g0764500 AK066291.1 - Lhca5 protein 8e-3 At1g45474 LHCA5 S.X. H.G.
0.73 91.1 Os03g0311300 AK073167.1 - The start codon is not identified. 1e-27 At1g56500 haloacid dehalogenase-like hydrolase family protein S.X. H.G.
0.71 89.6 Os07g0171100 AK066475.1 - TPR-like domain containing protein 2e-16 At1g55480 binding / protein binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.3 98.2 GSM174887 D FR13 3 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
9.2 97.9 GSM174888 C mock 3 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
7.6 97.5 GSM174890 G mock 4 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
7.5 97.5 GSM174883 A mock 3 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
7.5 97.5 GSM174885 B FR13 3 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
7.3 97.5 GSM421722 MOCK, 24 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
6.6 97.3 GSM421710 MOCK, 2 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
6.5 97.2 GSM421670 XOC, 2 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
6.3 97.2 GSM421679 XOC, 24 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
6.3 97.2 GSM421702 XOO, 24 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-1 38 Os08g0517800 9636.m04110 - Thaumatin, pathogenesis-related family protein 6e-4 At4g38670 pathogenesis-related thaumatin family protein C.G. S.X.
0.02 2e+0 34 Os09g0386800 9637.m01886 - - 2e-1 At1g29962 AGL64 (AGAMOUS-LIKE 64) C.G. S.X.
0.01 4e-1 38 Os06g0703300 AK105426.1 - Protein of unknown function DUF594 family protein 1e+0 At4g19080 unknown protein C.G. S.X.
0.01 2e+0 36 Os07g0654400 9635.m04629 - BLE2 protein 1e-1 At2g34150 WAVE1 C.G. S.X.
0.01 2e+0 34 Os01g0870100 AK067564.1 - DMI1 protein 1e-63 At5g49960 binding / catalytic C.G. S.X.
0.01 2e+0 34 Os04g0111900 AK121138.1 - Vrga1 6e-2 At2g14288 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At1g31250 840013 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMPBFVA - - - C.G. S.X.
0.03 1e+0 34 Glycine max PsAffx.psMY004iH03r_at PsAffx.psMY004iH03r - - 2e-1 At5g14590 isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative C.G. S.X.
0.18 1e-20 99 Hordeum vulgare Contig1760_s_at Contig1760 - - 2e-9 At1g09340 CRB (CHLOROPLAST RNA BINDING) C.G. S.X.
0.03 1e+0 34 Populus trichocarpa PtpAffx.249.622.A1_at CV263466 - - 8e-2 At2g34720 NF-YA4 (NUCLEAR FACTOR Y, SUBUNIT A4) C.G. S.X.
0.15 2e-20 99 Triticum aestivum Ta.1983.1.S1_at CD884181 - - 1e-8 At1g09340 CRB (CHLOROPLAST RNA BINDING) C.G. S.X.
0.13 3e-1 34 Vitis vinifera 1621301_at CB341732 hypothetical protein LOC100261308 - 4e-22 At1g09340 CRB (CHLOROPLAST RNA BINDING) C.G. S.X.
0.30 8e-18 89 Zea mays Zm.7905.1.S1_at BM078113 hypothetical protein LOC100193292 - 6e-15 At1g09340 CRB (CHLOROPLAST RNA BINDING) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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