CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os12g0403800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 79.7 Os12g0403800 AK064189.1 - 3' exoribonuclease domain containing protein 5e-2 At3g07750 3' exoribonuclease family domain 1-containing protein S.X. H.G.
0.55 73.7 Os02g0101100 AK068038.1 - Initiation factor 3 family protein 1e+0 At5g12870 MYB46 (MYB DOMAIN PROTEIN 46) S.X. H.G.
0.44 58.1 Os04g0691500 AK069073.1 - Importin-beta, N-terminal domain containingprotein 3e-11 At2g16950 TRN1 (TRANSPORTIN 1) S.X. H.G.
0.43 55.4 Os01g0276800 AK062536.1 - Pectin lyase-like family protein 2e-5 At5g56360 calmodulin-binding protein S.X. H.G.
0.43 55.4 Os05g0392300 AK062401.1 - CDC2+/CDC28-related protein kinase R2 (EC 2.7.1.-) 7e-11 At1g18040 CDKD1 S.X. H.G.
0.29 31.1 Os01g0906200 AK106369.1 - Hypothetical protein 8e-7 At1g50500 HIT1 (HEAT-INTOLERANT 1) S.X. H.G.
0.16 11.3 Os05g0581800 AK100204.1 - Protein of unknown function DUF1296 family protein 2e+0 At1g07485 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.5 97.2 GSM275414 Azucena root tip_Before the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.4 97.2 GSM275416 Azucena root tip_Before the wax layer_Rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.2 97.1 GSM275408 Bala root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.4 96.8 GSM275406 Azucena root tip_At the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.1 96.6 GSM275407 Azucena root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.0 96.6 GSM275405 Azucena root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.3 96.1 GSM275413 Azucena root tip_Buckled at the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.9 95.8 GSM159185 Y Leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
3.9 95.8 GSM159186 SAM, biological rep 1 GSE6893 Expression data for reproductive development in rice
3.8 95.7 GSM275415 Azucena root tip_Before the wax layer_Rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 3e-19 97 Os11g0423800 AK064691.1 - Mitochondrial basic amino acid carrier 4e-9 At2g33820 MBAC1 C.G. S.X.
0.05 5e-12 73 Os03g0285900 AK073348.1 - Splicing factor RSZ33 5e-17 At3g53500 zinc knuckle (CCHC-type) family protein C.G. S.X.
0.05 5e-12 73 Os08g0363000 AK106532.1 - Conserved hypothetical protein 2e-1 At2g23830 vesicle-associated membrane protein, putative / VAMP, putative C.G. S.X.
0.04 2e-8 61 Os02g0467700 AK121672.1 - C terminus subunit of GlcA transferase 4e-1 At4g16710 glycosyltransferase family protein 28 C.G. S.X.
0.04 2e-8 61 Os08g0474600 AK101574.1 - Heat shock protein DnaJ, N-terminal domaincontaining protein 1e-2 At2g37090 IRX9 (IRREGULAR XYLEM 9) C.G. S.X.
0.03 5e-9 63 Os05g0310800 AK068582.1 - Coatomer delta subunit (Delta-coat protein)(Delta-COP) 3e-7 At5g05010 clathrin adaptor complexes medium subunit-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-2 40 Arabidopsis thaliana At3g07750 819966 3' exoribonuclease family domain 1-containing protein F:3'-5'-exoribonuclease activity, RNA binding;P:RNA processing;C:cellular_component unknown;MOFAPB - - - C.G. S.X.
0.05 1e-6 56 Glycine max Gma.13975.1.A1_at CD412131 - - 3e+0 At2g45640 SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18) C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig6742_at Contig6742 - - 1e-1 At3g62410 CP12-2 C.G. S.X.
0.17 4e-9 63 Populus trichocarpa PtpAffx.82205.1.A1_at CV256137 hypothetical protein - 1e-26 At3g07750 3' exoribonuclease family domain 1-containing protein C.G. S.X.
0.11 6e-17 89 Triticum aestivum Ta.11298.1.A1_at BQ169802 - - 3e+0 At3g20865 AGP40 (arabinogalactan-protein 40) C.G. S.X.
0.02 8e-1 34 Vitis vinifera 1610529_at CB976934 hypothetical protein LOC100255602 - 1e+0 At4g32690 GLB3 C.G. S.X.
0.45 4e-139 494 Zea mays Zm.3913.1.A1_at CF000034 hypothetical protein LOC100279777 - 3e-6 At3g07750 3' exoribonuclease family domain 1-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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