CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os12g0274700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 91.1 Os12g0274700 AF017364.1 - Ribulose-1,5-bisphosphate carboxylase/oxygenasesmall subunit (Fragment) 9e-9 At1g67090 RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) S.X. H.G.
0.90 97.1 Os07g0544800 AK069170.1 - Oxygen-evolving enhancer protein 3-2, chloroplastprecursor (OEE3) (16 kDa subunit of oxygen evolvingsystem of photosystem II) (OEC 16 kDa subunit)(Ferredoxin-NADP reductase binding protein) (BP) 1e-4 At4g21280 oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ) S.X. H.G.
0.90 97.1 Os07g0141400 AF022732.1 - 23 kDa polypeptide of photosystem II 2e-13 At1g06680 PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1) S.X. H.G.
0.86 96.4 Os06g0320500 AF094776.1 - Chlorophyll a/b-binding protein 4e-9 At3g54890 LHCA1 S.X. H.G.
0.85 96.1 Os03g0778100 AK060493.1 - Photosystem I reaction center subunit III,chloroplast precursor (Light-harvesting complex I 17 kDaprotein) (PSI-F) 6e-7 At1g31330 PSAF (photosystem I subunit F) S.X. H.G.
0.82 95.0 Os07g0148900 AK058788.1 - Photosystem I reaction center subunit psaK,chloroplast precursor (Photosystem I subunit X) (PSI-K)(Light-harvesting complex I 7 kDa protein) 4e-10 At1g30380 PSAK (photosystem I subunit K) S.X. H.G.
0.81 94.8 Os02g0197600 AK106085.1 - Chlorophyll a/b-binding protein type III(Fragment) 1e-14 At1g61520 LHCA3 S.X. H.G.
0.80 94.6 Os04g0414700 AK058848.1 - Conserved hypothetical protein 3e-5 At1g08380 PSAO (photosystem I subunit O) S.X. H.G.
0.80 94.6 Os06g0316800 AK062370.1 - Glycine-rich protein (Fragment) 2e+0 At5g40490 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.77 93.1 Os08g0119800 AK060602.1 - - 3e-2 At2g33510 protein binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.5 96.3 GSM267999 Green leaves in F9G RILs from parents lines GSE10872 Molecular characterization and genetic analysis reveal SA0420 as an early senescing rice mutant with pleotropic
3.9 95.8 GSM431938 Shoot- +Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
3.9 95.8 GSM431937 Shoot- +Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
3.8 95.7 GSM421691 XOO, 4 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
3.7 95.6 GSM431933 Shoot- +Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
3.6 95.5 GSM421723 MOCK, 96 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
3.5 95.3 GSM281584 Rice Zhonghua11, biological rep2 GSE11175 Comparison of transcriptome profile between wild-type and dst mutant plants
3.5 95.3 GSM431939 Shoot- -Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
3.5 95.3 GSM174890 G mock 4 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
3.5 95.3 GSM421713 MOCK, 4 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.45 6e-178 624 Os12g0291100 CB669997 - Ribulose bisphosphate carboxylase, small chainfamily protein 9e-6 At1g67090 RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) C.G. S.X.
0.45 1e-166 587 Os12g0292400 AK070257.1 - Petunia ribulose 1,5-bisphosphate carboxylasesmall subunit mRNA (clone pSSU 51), partial cds.(Fragment) 3e-7 At1g67090 RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) C.G. S.X.
0.44 1e-157 557 Os12g0291400 CB682251 - Ribulose-1,5-bisphosphate carboxylase/oxygenasesmall subunit (Fragment) 4e-5 At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 9e-9 61 Arabidopsis thaliana At1g67090 843029 RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) F:ribulose-bisphosphate carboxylase activity, copper ion binding;P:response to blue light, response to cold, carbon utilization by fixation of carbon dioxide, response to red light, response to far red light;C:in 10 components;POB - - - C.G. S.X.
0.20 2e-16 87 Glycine max Gma.289.1.S1_x_at AF303941.1 ribulose-1,5-bisphosphate carboxylase small subunit rbcS2 /// ribulose-1,5-bisphosphate carboxylase small subunit /// ribulose-1,5-bisphosphate carboxylase small subunit - 7e-34 At1g67090 RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) C.G. S.X.
0.47 8e-122 436 Hordeum vulgare Contig589_x_at Contig589 - - 4e-4 At1g67090 RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) C.G. S.X.
0.14 2e-10 67 Populus trichocarpa PtpAffx.249.97.A1_x_at CV277590 hypothetical protein - 3e-33 At1g67090 RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) C.G. S.X.
0.43 5e-94 345 Triticum aestivum Ta.2752.3.S1_x_at BJ266715 ribulosebisphosphate carboxylase small subunit - 8e-12 At1g67090 RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) C.G. S.X.
0.12 5e-23 107 Vitis vinifera 1613936_x_at CF568996 - - 8e-24 At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) C.G. S.X.
0.36 9e-38 157 Zea mays Zm.6763.4.S1_at BG841872 hypothetical protein LOC100279574 - 8e-6 At1g67090 RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0015977 Any process by which inorganic carbon (usually carbon dioxide) is incorporated into organic compounds (usually carbohydrates).
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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