CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os12g0254900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os12g0254900 9640.m01483 - - 3e+0 At5g25940 early nodulin-related S.X. H.G.
0.73 91.1 Os03g0825000 9631.m06010 - - 2e+0 At4g32870 unknown protein S.X. H.G.
0.67 87.2 Os03g0183900 9631.m00801 - ATPase 10, plasma membrane-type (EC 3.6.3.6)(Proton pump 10) 2e-30 At1g17260 AHA10 (Autoinhibited H(+)-ATPase isoform 10) S.X. H.G.
0.48 63.7 Os05g0531300 9634.m00196 - - 3e-1 At3g17160 unknown protein S.X. H.G.
0.38 46.9 Os11g0496300 9639.m02744 - - 2e-1 At4g13720 inosine triphosphate pyrophosphatase, putative / HAM1 family protein S.X. H.G.
0.35 41.7 Os04g0187200 9632.m00951 - - 1e+0 At5g50440 MEMB12 (MEMBRIN 12) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
354.7 100.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.5 98.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.1 98.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
3.5 95.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
2.1 92.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
2.1 92.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
1.5 89.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
1.3 87.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
1.2 86.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
1.2 86.9 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-4 46 Os01g0917900 AK109460.1 - Zn-finger, RING domain containing protein 3e+0 At4g15030 unknown protein C.G. S.X.
0.03 9e-5 48 Os10g0160100 AK073394.1 - Glycoside hydrolase, family 17 protein 1e-2 At5g42100 ATBG_PAP C.G. S.X.
0.03 3e-4 46 Os03g0212300 AK070861.1 - Transcriptional factor B3 family protein 7e-1 At1g64370 unknown protein C.G. S.X.
0.03 1e-3 44 Os02g0168300 AK103301.1 - Hypothetical protein 2e-10 At1g06660 unknown protein C.G. S.X.
0.03 1e-3 44 Os09g0261900 AK119585.1 - Hypothetical protein 8e-2 At3g53990 universal stress protein (USP) family protein C.G. S.X.
0.02 1e-3 44 Os09g0425700 AK066836.1 - N-myristoyltransferase-like protein 2 1e+0 At4g00180 YAB3 (YABBY3) C.G. S.X.
0.01 1e-3 44 Os12g0608500 AK107367.1 - Protein kinase domain containing protein 6e-6 At5g10530 lectin protein kinase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 3e+0 32 Arabidopsis thaliana At5g25940 832663 early nodulin-related F:molecular_function unknown;P:unknown;C:mitochondrion;P - - - C.G. S.X.
0.08 1e-2 40 Glycine max PsAffx.psZG008xI07f_at PsAffx.psZG008xI07f - - 6e-1 At5g25940 early nodulin-related C.G. S.X.
0.06 8e-2 36 Hordeum vulgare Contig14924_s_at Contig14924 - - 8e-1 At1g66560 WRKY64 C.G. S.X.
0.03 9e-1 34 Populus trichocarpa Ptp.655.1.S1_at CK088303 - - 6e-18 At4g28390 AAC3 (ADP/ATP CARRIER 3) C.G. S.X.
0.09 4e-2 38 Triticum aestivum Ta.12877.1.S1_at CA486441 - - 2e+1 At5g12990 CLE40 (CLAVATA3/ESR-RELATED 40) C.G. S.X.
0.04 8e-1 32 Vitis vinifera 1618440_s_at CD801284 hypothetical protein LOC100256565 - 2e-2 At5g15600 SP1L4 (SPIRAL1-LIKE4) C.G. S.X.
0.06 2e-2 38 Zea mays ZmAffx.967.1.S1_s_at AI668376 Hypothetical protein LOC100193584 - 1e+1 At5g29613 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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