CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os12g0247700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 73.7 Os12g0247700 AK066682.1 - Beta-glucosidase aggregating factor 2e+0 At4g09650 ATPD (ATP SYNTHASE DELTA-SUBUNIT GENE) S.X. H.G.
0.50 68.0 Os12g0559200 BM421235 - Lipoxygenase (EC 1.13.11.12) 2e+0 At5g57750 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.35 41.7 Os12g0458100 AK065433.1 - Transferase family protein 4e+0 At1g18790 RWP-RK domain-containing protein S.X. H.G.
0.33 38.8 Os01g0108400 AU096466 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 4e-1 At1g76940 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.18 13.7 Os08g0168000 AK108761.1 - Terpene synthase, metal-binding domain containingprotein 8e-1 At5g52190 sugar isomerase (SIS) domain-containing protein S.X. H.G.
0.14 9.3 Os07g0526400 BI806666 - Chalcone synthase (EC 2.3.1.74)(Naringenin-chalcone synthase) 4e+0 At3g21920 pollen coat receptor kinase, putative S.X. H.G.
0.10 5.7 Os01g0117600 AK065867.1 - - 3e-4 At3g07070 protein kinase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
37.9 99.8 GSM154959 Leaf_OsRR6-overexpressor_replicate 1 GSE6720 Gene expression in OsRR6-overexpression line
31.8 99.7 GSM154960 Leaf_OsRR6-overexpressor_replicate 2 GSE6720 Gene expression in OsRR6-overexpression line
31.4 99.7 GSM421670 XOC, 2 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
25.6 99.5 GSM421698 XOO, 8 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
25.1 99.5 GSM281583 Rice Zhonghua11, biological rep1 GSE11175 Comparison of transcriptome profile between wild-type and dst mutant plants
21.4 99.2 GSM375772 gid2-1_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
20.9 99.2 GSM375770 gid2-1_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
18.0 98.9 GSM421678 XOC, 8 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
17.4 98.9 GSM375769 gid2-1_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
16.8 98.8 GSM421706 XOO, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.58 2e-76 287 Os12g0198700 AK101991.1 - Beta-glucosidase aggregating factor 2e+0 At1g56580 unknown protein C.G. S.X.
0.18 5e-9 63 Os12g0228700 BX900947 - Beta-glucosidase aggregating factor 7e-2 At5g07380 unknown protein C.G. S.X.
0.05 5e-6 54 Os12g0227500 9640.m01212 - Beta-glucosidase aggregating factor 9e-1 At3g15810 unknown protein C.G. S.X.
0.04 1e-6 56 Os10g0334500 NM_195796.1 - Conserved hypothetical protein 2e-2 At1g07700 thioredoxin family protein C.G. S.X.
0.03 8e-2 40 Os01g0351500 9629.m02418 - - 9e-1 At2g33470 GLTP1 (glycolipid transfer protein 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 Arabidopsis thaliana At4g09650 826551 ATPD (ATP SYNTHASE DELTA-SUBUNIT GENE) Encodes the chloroplast ATPase delta-subunit. - - - C.G. S.X.
0.02 3e+0 34 Glycine max GmaAffx.29827.1.S1_at AW306644 - - 3e+0 At1g73650 oxidoreductase, acting on the CH-CH group of donors C.G. S.X.
0.11 6e-18 91 Hordeum vulgare Contig7886_at Contig7886 - - 8e+0 At5g39790 5'-AMP-activated protein kinase beta-1 subunit-related C.G. S.X.
0.02 8e-1 36 Populus trichocarpa PtpAffx.148399.1.S1_at CF234711 hypothetical protein - 2e-2 At3g25545 unknown protein C.G. S.X.
0.12 3e-12 73 Triticum aestivum Ta.20793.2.S1_at CA626483 - - 4e+0 At5g63090 LOB (LATERAL ORGAN BOUNDARIES) C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1617304_at CF404560 hypothetical protein LOC100245676 - 1e+0 At3g11580 DNA-binding protein, putative C.G. S.X.
0.10 5e-9 61 Zea mays Zm.4999.1.S1_at AI600285 - - 7e-1 At5g04047 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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