CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os12g0244400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.56 76.3 Os12g0244400 AK070297.1 - Amino acid/polyamine transporter II family protein 7e-14 At1g24400 LHT2 (LYSINE HISTIDINE TRANSPORTER 2) S.X. H.G.
0.80 94.6 Os07g0237200 9635.m01313 - Conserved hypothetical protein 3e-1 At4g29035 - S.X. H.G.
0.80 94.6 Os01g0567500 AK069327.1 - Monosaccharide transporter 3 1e-9 At1g11260 STP1 (SUGAR TRANSPORTER 1) S.X. H.G.
0.71 89.6 Os09g0497500 AK072767.1 - Peptidase C1A, papain family protein 3e-3 At2g27420 cysteine proteinase, putative S.X. H.G.
0.61 81.2 Os04g0650200 AK109786.1 - Lipolytic enzyme, G-D-S-L family protein 2e-1 At3g24420 hydrolase, alpha/beta fold family protein S.X. H.G.
0.50 68.0 Os08g0402800 AK070604.1 - Protein of unknown function DUF6 domain containingprotein 2e-1 At1g07950 surfeit locus protein 5 family protein / SURF5 family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
102.3 100.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
28.9 99.6 GSM159204 Inflorescence (P6, 22 - 30 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
26.2 99.5 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
25.5 99.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.8 99.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.9 99.2 GSM159205 Inflorescence (P6, 22 - 30 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
20.0 99.1 GSM159206 Inflorescence (P6, 22 - 30 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
19.4 99.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.9 98.6 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.6 98.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.48 2e-132 474 Os08g0127100 AK065217.1 - Lysine and histidine specific transporter 3e-19 At5g40780 LHT1 C.G. S.X.
0.40 1e-50 202 Os05g0237800 9633.m01302 - - 3e-3 At3g01760 lysine and histidine specific transporter, putative C.G. S.X.
0.28 2e-27 125 Os04g0462400 9632.m03670 - Lysine and histidine specific transporter 1e-5 At1g25530 lysine and histidine specific transporter, putative C.G. S.X.
0.03 5e-4 48 Os04g0562100 AK060598.1 - Amino acid/polyamine transporter II family protein 4e+0 At1g18080 ATARCA C.G. S.X.
0.02 7e-6 54 Os05g0424000 AK065891.1 - Amino acid carrier (Fragment) 2e-8 At5g09220 AAP2 (AMINO ACID PERMEASE 2) C.G. S.X.
0.02 7e-3 44 Os01g0878700 AK121636.1 - Amino acid/polyamine transporter II family protein 2e-1 At1g10010 AAP8 C.G. S.X.
0.01 3e-2 42 Os05g0137500 9633.m00395 - - 1e-8 At1g68150 WRKY9 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 7e-14 79 Arabidopsis thaliana At1g24400 839057 LHT2 (LYSINE HISTIDINE TRANSPORTER 2) High-affinity transporter for neutral and acidic amino acids, expressed in tapetum tissue of anthers - - - C.G. S.X.
0.04 3e-4 48 Glycine max GmaAffx.80890.1.S1_at BI317615 - - 1e-19 At1g25530 lysine and histidine specific transporter, putative C.G. S.X.
0.12 9e-21 101 Hordeum vulgare HM10P19r_at HM10P19r - - 1e+0 At4g03298 unknown protein C.G. S.X.
0.14 9e-17 89 Populus trichocarpa PtpAffx.201013.1.S1_at pmrna1989 lysine/histidine transporter - 1e-21 At5g40780 LHT1 C.G. S.X.
0.34 2e-103 377 Triticum aestivum Ta.12339.1.S1_s_at BT009250.1 - - 5e-15 At1g24400 LHT2 (LYSINE HISTIDINE TRANSPORTER 2) C.G. S.X.
0.02 1e-6 54 Vitis vinifera 1617470_s_at BQ797931 similar to LHT1 (LYSINE HISTIDINE TRANSPORTER 1); amino acid transmembrane transporter - 6e-11 At1g48640 lysine and histidine specific transporter, putative C.G. S.X.
0.26 3e-63 242 Zea mays Zm.15307.1.A1_at CF014037 - - 2e-11 At1g24400 LHT2 (LYSINE HISTIDINE TRANSPORTER 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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