Gene omics information

Query gene ID	Os12g0231000
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.94	99.4	Os12g0231000	AK120737.1	-	TGF-beta receptor, type I/II extracellular regionfamily protein	1e+0	At1g68480	JAG (JAGGED)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.57	77.0	Os01g0558800	AK068120.1	-	Conserved hypothetical protein	8e-1	At5g19300	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os07g0222900	CB645570	-	KDPG and KHG aldolase family protein	3e+0	At3g52720	ACA1 (ALPHA CARBONIC ANHYDRASE 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.42	53.9	Os01g0142100	AK065031.1	-	Peptidase M50 family protein	1e-6	At5g05740	EGY2	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.39	48.3	Os07g0510100	AK066776.1	-	Methionine aminopeptidase-like protein	3e-19	At1g13270	MAP1C (METHIONINE AMINOPEPTIDASE 1B)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.38	46.9	Os11g0153700	AK058576.1	-	Signal recognition particle 54 kDa protein,chloroplast precursor (SRP54) (54 chloroplast protein)(54CP) (FFC)	2e-35	At5g03940	CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.36	44.0	Os03g0271100	AB095095.1	-	Sigma factor SIG2B	4e-3	At1g08540	SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.35	41.7	Os01g0664000	NM_191896.1	-	C-terminal peptidase of the D1 protein (Fragment)	2e-13	At5g46390	peptidase S41 family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.30	32.7	Os03g0736400	AK105812.1	-	Conserved hypothetical protein 95 family protein	1e-24	At3g28460	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
33.9	99.8	GSM207562	Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep1	GSE8380	Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
30.6	99.7	GSM207558	Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep1	GSE8380	Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
26.6	99.5	GSM207564	Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep3	GSE8380	Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
25.4	99.5	GSM207560	Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep3	GSE8380	Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
24.6	99.4	GSM207563	Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep2	GSE8380	Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
20.7	99.2	GSM99861	TCHW P4_m103 salt stress, biological rep1	GSE4438	Expression data from rice under salinity stress
20.3	99.1	GSM207559	Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep2	GSE8380	Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
13.3	98.4	GSM207566	Mudanjiang8 wild type control rep2	GSE8380	Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
13.1	98.4	GSM99862	TCHW P5_m103 salt stress, biological rep2	GSE4438	Expression data from rice under salinity stress
9.7	98.0	GSM207565	Mudanjiang8 wild type control rep1	GSE8380	Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	4e-45	184	Os11g0282800	9639.m01654	-	TGF-beta receptor, type I/II extracellular regionfamily protein	8e-1	At1g25380	mitochondrial substrate carrier family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.27	3e-33	145	Os11g0283500	AK105635.1	-	TGF-beta receptor, type I/II extracellular regionfamily protein	1e+0	At1g29090	peptidase C1A papain family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.13	3e-12	75	Os04g0491200	9632.m03944	-	TGF-beta receptor, type I/II extracellular regionfamily protein	6e-1	At3g28950	avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.08	4e-45	184	Os11g0282900	AK111488.1	-	Conserved hypothetical protein	2e+0	At3g61870	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e+0	36	Arabidopsis thaliana	At1g68480	843177	JAG (JAGGED)	Encodes a putative zinc finger transcription factor that is necessary for proper lateral organ shape and is sufficient to induce the proliferation of lateral organ tissue. Together with NUB, it is involved in stamen and carpel development.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e-1	40	Glycine max	PsAffx.CL16Contig1_at	PsAffx.CL16Contig1	-	-	9e-7	At4g15530	PPDK (pyruvate orthophosphate dikinase)	C.G.	S.X.	Please select
0.05	4e-5	50	Hordeum vulgare	Contig6574_at	Contig6574	-	-	2e-2	At5g01180	PTR5 (PEPTIDE TRANSPORTER 5)	C.G.	S.X.	Please select
0.01	2e+0	36	Populus trichocarpa	PtpAffx.220479.1.S1_at	pmrna36872	-	-	2e+0	At1g56530	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	1e-34	149	Triticum aestivum	Ta.13980.1.S1_at	BQ753172	-	-	1e+0	At4g21610	LOL2 (LSD ONE LIKE 2)	C.G.	S.X.	Please select
0.01	1e+0	34	Vitis vinifera	1612101_s_at	CF604970	hypothetical protein LOC100246433	-	1e+0	At1g31170	SRX (SULFIREDOXIN)	C.G.	S.X.	Please select
0.04	5e-7	56	Zea mays	Zm.7782.1.A1_at	BM079881	-	-	3e-1	At5g66250	kinectin-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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