CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os12g0218300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os12g0218300 AK063060.1 - Hypothetical protein 3e-1 At3g48208 - S.X. H.G.
0.83 95.8 Os12g0221600 AK062469.1 - Hypothetical protein 1e+0 At5g43570 serine-type endopeptidase inhibitor S.X. H.G.
0.80 94.6 Os12g0218800 AK107720.1 - Hypothetical protein 2e-5 At3g50550 unknown protein S.X. H.G.
0.67 87.2 Os11g0160400 AK109030.1 - Hypothetical protein 4e-2 At3g53650 histone H2B, putative S.X. H.G.
0.53 71.3 Os01g0940800 AK068247.1 - Beta-1,3-glucanase precursor 1e-5 At5g20560 beta-1,3-glucanase, putative S.X. H.G.
0.36 44.0 Os10g0569600 BQ529575 - RIR1b protein precursor 1e+0 At2g25344 LCR14 (Low-molecular-weight cysteine-rich 14) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
255.1 100.0 GSM262020 Nipponbare, 11 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
96.0 100.0 GSM262021 Nipponbare, 11 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
24.0 99.4 GSM262016 Nipponbare, 4 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
22.7 99.3 GSM262017 Nipponbare, 4 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
3.5 95.3 GSM154960 Leaf_OsRR6-overexpressor_replicate 2 GSE6720 Gene expression in OsRR6-overexpression line
2.9 94.5 GSM262019 Nipponbare, 11 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
2.9 94.5 GSM262012 Nipponbare, 2 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
2.6 93.8 GSM262013 Nipponbare, 2 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
2.3 93.0 GSM154959 Leaf_OsRR6-overexpressor_replicate 1 GSE6720 Gene expression in OsRR6-overexpression line
1.7 90.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.59 1e-33 145 Os12g0221600 AK062469.1 - Hypothetical protein 1e+0 At5g43570 serine-type endopeptidase inhibitor C.G. S.X.
0.06 4e-5 50 Os03g0145900 AK120297.1 - PGPD14 2e-2 At5g22920 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 4e-2 40 Os08g0448100 AK108891.1 - Conserved hypothetical protein 2e+0 At5g23680 sterile alpha motif (SAM) domain-containing protein C.G. S.X.
0.02 1e-2 42 Os03g0756400 AK099399.1 - Conserved hypothetical protein 2e-4 At5g27210 - C.G. S.X.
0.01 4e-2 40 Os04g0543900 AK063467.1 - Glutamate dehydrogenase 2 (EC 1.4.1.3) (GDH 2) 5e-61 At5g07440 GDH2 (GLUTAMATE DEHYDROGENASE 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-1 36 Arabidopsis thaliana At3g48208 5008075 - Encodes a Plant thionin family protein - - - C.G. S.X.
0.04 1e-1 38 Glycine max GmaAffx.57493.1.S1_at AW395853 - - 2e+0 At4g16460 unknown protein C.G. S.X.
0.03 6e-1 34 Hordeum vulgare HA05g22r_x_at HA05g22r - - 4e-2 At1g47960 C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1) C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.22555.1.S1_s_at DN496656 hypothetical protein - 1e-10 At2g29210 splicing factor PWI domain-containing protein C.G. S.X.
0.04 3e-1 36 Triticum aestivum Ta.11776.3.S1_at BQ170773 - - 4e+0 At5g09610 APUM21 (Arabidopsis Pumilio 21) C.G. S.X.
0.04 2e-2 38 Vitis vinifera 1611360_s_at CF372855 hypothetical protein LOC100264047 - 8e+0 At5g54170 - C.G. S.X.
0.03 4e-5 48 Zea mays Zm.14990.1.A1_at BM332178 - - 1e-1 At4g12220 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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