CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os12g0199100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.56 76.3 Os12g0199100 AK065572.1 - Disease resistance protein family protein 2e+0 At5g49590 unknown protein S.X. H.G.
0.56 76.3 Os02g0704800 BM420590 - Ornithine carbamoyltransferase OOCT1 (EC 2.1.3.3) 2e+0 At1g52680 late embryogenesis abundant protein-related / LEA protein-related S.X. H.G.
0.44 58.1 Os04g0380200 AK104769.1 - Conserved hypothetical protein 1e-1 At3g27210 unknown protein S.X. H.G.
0.44 58.1 Os09g0447300 CB675967 - Cytochrome P450 family protein 2e+0 At3g52060 unknown protein S.X. H.G.
0.32 36.3 Os08g0129400 9636.m00269 - - 4e+0 At1g22520 unknown protein S.X. H.G.
0.19 15.1 Os01g0282400 NM_187704.1 - - 2e+1 At5g25280 serine-rich protein-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
247.5 100.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.9 97.6 GSM195226 Root GSE7951 Genome-wide gene expression profiling of rice stigma
7.5 97.5 GSM262012 Nipponbare, 2 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
6.5 97.2 GSM262005 IAC165, 4 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
6.2 97.1 GSM262004 IAC165, 4 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
6.2 97.1 GSM262013 Nipponbare, 2 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
5.5 96.8 GSM149410 Rice Azucena 1ppm Arsenate Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
5.0 96.6 GSM262017 Nipponbare, 4 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
4.7 96.4 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
4.5 96.3 GSM261999 IAC165, 2 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 3e-7 59 Os11g0479100 9639.m02614 - Disease resistance protein family protein 2e+0 At3g33520 ATARP6 C.G. S.X.
0.05 2e-8 63 Os05g0250700 9633.m01443 - Disease resistance protein family protein 2e+0 At3g60520 unknown protein C.G. S.X.
0.01 1e-6 57 Os10g0394400 AK062938.1 - Leucine-rich repeat, typical subtype containingprotein 6e-1 At5g56200 zinc finger (C2H2 type) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e+0 36 Arabidopsis thaliana At5g49590 835021 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P - - - C.G. S.X.
0.01 3e+0 36 Glycine max PsAffx.CL907Contig1_at PsAffx.CL907Contig1 - - 2e+0 At2g28790 osmotin-like protein, putative C.G. S.X.
0.01 1e+0 36 Hordeum vulgare rbah25b20_s_at rbah25b20 - - 9e-1 At4g02465 unknown protein C.G. S.X.
0.01 7e-1 38 Populus trichocarpa PtpAffx.5471.3.A1_at CV259746 hypothetical protein - 4e-7 At3g09640 APX2 (ASCORBATE PEROXIDASE 2) C.G. S.X.
0.02 2e+0 36 Triticum aestivum TaAffx.12132.1.S1_at BJ289382 - - 1e+0 At5g47000 peroxidase, putative C.G. S.X.
0.01 4e-2 40 Vitis vinifera 1616369_at CF371742 hypothetical protein LOC100248235 - 3e-55 At5g49910 CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2) C.G. S.X.
0.01 6e-2 40 Zea mays Zm.6173.1.A1_at CF011964 IDP22 protein - 2e+0 At1g17615 disease resistance protein (TIR-NBS class), putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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