Gene omics information

Query gene ID	Os12g0169800
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.87	96.6	Os12g0169800	9640.m00650	-	Calcium-dependent protein kinase SK5 (EC 2.7.1.-)(CDPK)	2e-8	At4g09570	CPK4	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.58	77.0	Os12g0617900	AK066418.1	-	Serine/threonine protein phosphatase BSL2 (EC3.1.3.16) (BSU1-like protein 2)	5e-109	At2g27210	kelch repeat-containing serine/threonine phosphoesterase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.55	73.7	Os02g0101700	AK072570.1	-	HECT ubiquitin-protein ligase 3 (KAKTUS protein)	2e-14	At4g38600	KAK (KAKTUS)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.54	71.9	Os03g0833300	AK065741.1	-	SBP domain containing protein	1e-4	At2g47070	SPL1 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.54	71.9	Os10g0575200	AK066761.1	-	Protein psi1 (Protein psi)	1e-30	At2g26890	GRV2 (GRAVITROPISM DEFECTIVE 2)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.53	71.3	Os09g0434000	AK062791.1	-	FYVE/PHD zinc finger domain containing protein	9e-30	At3g43240	ARID/BRIGHT DNA-binding domain-containing protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.53	71.3	Os07g0632600	AK102629.1	-	Heat shock protein DnaJ, N-terminal domaincontaining protein	1e+0	At4g29080	PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.51	68.7	Os05g0292200	AK065373.1	-	Transcription factor IIA large subunit (TFIIA-L1)	3e+0	At4g14315	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os03g0395600	AK063311.1	-	Hypothetical protein	4e-1	At1g30260	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.48	63.7	Os09g0281600	AK067020.1	-	SWAP/Surp domain containing protein	6e-12	At3g52120	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.5	98.3	GSM357133	14-day-old seedling, rep 2	GSE14275	Expression data for heat shock in rice seedlings
6.5	97.2	GSM195219	stigma 2, biological rep 2	GSE7951	Genome-wide gene expression profiling of rice stigma
5.5	96.8	GSM195220	stigma 3, biological rep 2	GSE7951	Genome-wide gene expression profiling of rice stigma
5.4	96.8	GSM357134	14-day-old seedling, rep 3	GSE14275	Expression data for heat shock in rice seedlings
5.4	96.8	GSM195218	stigma 1, biological rep1	GSE7951	Genome-wide gene expression profiling of rice stigma
5.1	96.6	GSM357122	14-day-old seedling, rep 1	GSE14275	Expression data for heat shock in rice seedlings
3.4	95.2	GSM67053	FL478 control replicate 2	GSE3053	Rice salt expression
3.2	94.9	GSM195226	Root	GSE7951	Genome-wide gene expression profiling of rice stigma
3.1	94.8	GSM409428	Nipponbare_young panicle 2cm, biological rep4	GSE16265	SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
3.0	94.6	GSM67057	FL478 salt stressed replicate 3	GSE3053	Rice salt expression

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.60	0	1639	Os11g0171500	AY144497.1	-	Calcium-dependent protein kinase SK5 (EC 2.7.1.-)(CDPK)	1e-9	At1g35670	ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.24	2e-27	125	Os02g0685900	C22384	-	Calcium dependent protein kinase	1e-16	At4g38230	CPK26	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.23	1e-44	182	Os03g0788500	AK072204.1	-	Calcium-dependent protein kinase 2	8e-30	At3g10660	CPK2 (CALMODULIN-DOMAIN PROTEIN KINASE CDPK ISOFORM 2)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.22	5e-44	180	Os12g0486600	9640.m02913	-	Calcium dependent protein kinase	5e-15	At5g04870	CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.19	1e-65	252	Os01g0808400	AK112112.1	-	Calcium-dependent protein kinase (Fragment)	2e-8	At5g19360	CPK34	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.13	4e-38	161	Os11g0136600	AF319480.1	-	Calcium-dependent protein kinase (Fragment)	5e-9	At5g12180	CPK17	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.12	7e-37	157	Os09g0514200	AK100474.1	-	-	1e-3	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.11	3e-42	174	Os05g0491900	9633.m03864	-	Calcium-dependent protein kinase	5e-15	At5g19360	CPK34	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	2e-8	61	Arabidopsis thaliana	At4g09570	826541	CPK4	Encodes a member of Calcium Dependent Protein Kinase (CDPK) gene family.Positive regulator of ABA signaling. Phosphorylates ABA responsive transcription factors ABF1 and ABF4.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.30	2e-20	101	Glycine max	Gma.8437.1.S1_at	AY247754.1	Calcium-dependent protein kinase SK5	-	8e-23	At5g23580	CDPK9 (CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9)	C.G.	S.X.	Please select
0.67	0	1316	Hordeum vulgare	Contig6447_at	Contig6447	-	-	4e-15	At1g35670	ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)	C.G.	S.X.	Please select
0.29	2e-30	135	Populus trichocarpa	PtpAffx.212106.1.S1_at	pmrna23742	calcium dependent protein kinase 12	-	5e-33	At5g23580	CDPK9 (CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.38	2e-97	357	Triticum aestivum	Ta.6350.3.S1_a_at	BJ235492	calcium-dependent protein kinase /// calcium-dependent protein kinase	-	3e-7	At1g35670	ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)	C.G.	S.X.	Please select
0.30	7e-42	171	Vitis vinifera	1610635_at	CF214231	similar to calcium-dependent protein kinase	-	2e-12	At1g35670	ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)	C.G.	S.X.	Please select
0.59	0	688	Zea mays	Zm.6306.1.A1_a_at	AY301062.2	calcium-dependent protein kinase ZmCPK11	-	9e-17	At1g35670	ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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