Gene omics information

Query gene ID	Os12g0169700
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.2	Os12g0169700	AK103904.1	-	Ferripyochelin-binding protein-like	8e-16	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.86	96.4	Os01g0649100	AF444195.1	-	Malate dehydrogenase	1e-33	At1g53240	malate dehydrogenase (NAD), mitochondrial	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.78	93.4	Os05g0301700	AK070578.1	-	Cytochrome c1 (Fragment)	5e-79	At3g27240	cytochrome c1, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.77	93.1	Os01g0685800	NM_192090.1	-	ATP synthase beta chain, mitochondrial precursor(EC 3.6.3.14)	6e-156	At5g08680	ATP synthase beta chain, mitochondrial, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.71	89.6	Os05g0553000	AK071143.1	-	ATP synthase beta chain, mitochondrial precursor(EC 3.6.3.14)	0	At5g08670	ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os03g0390400	AB025187.1	-	Cytochrome c oxidase subunit 6b (OSJNBa0029H02.1protein) (OSJNBa0067K08.22 protein)	7e-37	At1g22450	COX6B (CYTOCHROME C OXIDASE 6B)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.57	77.0	Os08g0431500	AK058993.1	-	Conserved hypothetical protein	3e-20	At4g16450	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.53	71.3	Os07g0495200	AK070990.1	-	ATP synthase delta' chain, mitochondrial precursor(EC 3.6.3.14)	1e-1	At5g47030	ATP synthase delta' chain, mitochondrial	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.6	96.3	GSM275409	Bala root tip_At the wax layer_rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.1	96.0	GSM275410	Bala root tip_At the wax layer_rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.9	95.8	GSM275412	Azucena root tip Buckled at the wax layer_rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.9	95.8	GSM275415	Azucena root tip_Before the wax layer_Rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.7	95.6	GSM275416	Azucena root tip_Before the wax layer_Rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.6	95.5	GSM99881	TCHW P23_ir29 salt stress, biological rep2	GSE4438	Expression data from rice under salinity stress
3.5	95.3	GSM275406	Azucena root tip_At the wax layer_rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.5	95.3	GSM99882	TCHW P24_ir29 salt stress, biological rep3	GSE4438	Expression data from rice under salinity stress
3.5	95.3	GSM99879	TCHW P21_ir29 control, biological rep3	GSE4438	Expression data from rice under salinity stress
3.3	95.1	GSM100443	Rice Bala 0ppm Arsenate (Control) Rep1	GSE4471	Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.66	0	1057	Os07g0642900	AK060158.1	-	Trimeric LpxA-like domain containing protein	5e-20	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.18	9e-14	79	Os01g0283100	AK071713.1	-	Ferripyochelin-binding protein-like	1e-35	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	3e-1	38	Os04g0226400	AK120419.1	-	Hypothetical protein	7e-7	At5g25265	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e+0	36	Os06g0285200	AY062183.1	-	Leafy cotyledon 1-like L1L protein	6e-10	At5g47670	NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e+0	36	Os07g0152200	9635.m00512	-	Receptor-like protein kinase	3e-5	At1g17230	ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e+0	36	Os11g0641500	AK103094.1	-	Multicopper oxidase, type 1 domain containingprotein	4e+0	At5g59180	NRPB7	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	8e-16	85	Arabidopsis thaliana	At1g19580	838545	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.21	7e-14	79	Glycine max	Gma.16388.1.S1_at	CD403252	-	-	1e-42	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please select
0.61	0	670	Hordeum vulgare	Contig4878_at	Contig4878	-	-	8e-19	At1g47260	GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2)	C.G.	S.X.	Please select
0.23	5e-24	113	Populus trichocarpa	Ptp.2146.1.S1_at	CK088192	hypothetical protein	-	5e-109	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.57	2e-180	632	Triticum aestivum	Ta.4019.1.S1_at	BJ250474	-	-	5e-14	At1g47260	GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2)	C.G.	S.X.	Please select
0.12	3e-6	52	Vitis vinifera	1608449_at	CB349956	hypothetical protein LOC100247109	-	6e-72	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please select
0.59	0	821	Zea mays	Zm.5237.1.A1_at	AY107290.1	hypothetical protein LOC100273890	-	2e-19	At1g47260	GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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