CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os12g0103300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 71.3 Os12g0103300 AU222596 - Protein transport protein SEC61 beta subunit 4e-3 At5g60460 sec61beta family protein S.X. H.G.
0.50 68.0 Os09g0541500 AK060244.1 - Longin-like domain containing protein 3e-29 At2g20930 - S.X. H.G.
0.27 27.5 Os05g0474400 AK060006.1 - - 6e-1 At3g56110 PRA1.B1 (PRENYLATED RAB ACCEPTOR 1.B1) S.X. H.G.
0.17 12.6 Os08g0248900 AK073613.1 - ADP-ribosylation factor 3 2e-46 At2g24765 ARF3 (ADP-RIBOSYLATION FACTOR 3) S.X. H.G.
0.17 12.6 Os12g0207300 AF443601.1 - Clathrin coat assembly protein AP17 (Clathrin coatassociated protein AP17) (Plasma membrane adaptor AP-2 17kDa protein) (HA2 17 kDa subunit) (Clathrin assemblyprotein 2 small chain) 9e-55 At1g47830 clathrin coat assembly protein, putative S.X. H.G.
0.11 6.5 Os11g0181100 AK100605.1 - Nonaspanin (TM9SF) family protein 2e-70 At1g10950 endomembrane protein 70, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.0 95.9 GSM409430 9311_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
3.9 95.8 GSM429984 Rice wild-type panicle rep2 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
3.7 95.6 GSM159192 Inflorescence (P2, 3 - 5 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
3.6 95.5 GSM159201 Inflorescence (P5, 15 - 22 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
3.3 95.1 GSM159202 Inflorescence (P5, 15 - 22 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
3.3 95.1 GSM159199 Inflorescence (P4, 10 - 15 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
3.3 95.1 GSM429982 Rice wild-type panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
3.2 94.9 GSM359907 FL478 root, salt-treated, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
3.2 94.9 GSM359914 IR63731 root, control, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
3.0 94.6 GSM159200 Inflorescence (P4, 10 - 15 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-1 38 Os06g0553100 9634.m03406 - Heat shock transcription factor 29 (Fragment) 1e-10 At3g22830 AT-HSFA6B C.G. S.X.
0.04 5e-4 46 Os02g0480300 9630.m02652 - - 2e+0 At4g33000 CBL10 (CALCINEURIN B-LIKE 10) C.G. S.X.
0.02 8e-3 42 Os02g0216600 AK064515.1 - Hypothetical protein 3e+0 At2g30933 - C.G. S.X.
0.02 1e-1 38 Os03g0323800 AK105342.1 - Porin, eukaryotic type family protein 4e-9 At3g20000 TOM40 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 4e-3 42 Arabidopsis thaliana At5g60460 836167 sec61beta family protein F:protein transporter activity;P:protein transport;C:plasma membrane;MFPOB - - - C.G. S.X.
0.12 2e-11 69 Glycine max Gma.5350.1.S1_s_at AW351218 - - 6e-18 At5g60460 sec61beta family protein C.G. S.X.
0.37 1e-50 198 Hordeum vulgare Contig5465_at Contig5465 - - 2e-4 At5g60460 sec61beta family protein C.G. S.X.
0.15 9e-5 48 Populus trichocarpa PtpAffx.18075.1.S1_at CV278430 - - 2e-12 At5g60460 sec61beta family protein C.G. S.X.
0.24 1e-58 226 Triticum aestivum Ta.13162.1.S1_at CK200289 - - 5e-4 At5g60460 sec61beta family protein C.G. S.X.
0.16 5e-12 69 Vitis vinifera 1620903_at CF605711 hypothetical protein LOC100260422 - 2e-12 At5g60460 sec61beta family protein C.G. S.X.
0.27 1e-50 198 Zea mays Zm.16986.1.S1_at CF632581 protein transport protein Sec61 beta subunit - 2e-2 At5g60460 sec61beta family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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