CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os11g0671200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os11g0671200 9639.m04164 - - 4e-4 At5g66110 metal ion binding S.X. H.G.
0.55 73.7 Os01g0886800 NM_190186.1 - - 2e+1 At5g42567 - S.X. H.G.
0.29 31.1 Os07g0550200 NM_185759.1 - - 7e-1 At2g44080 ARL (ARGOS-LIKE) S.X. H.G.
0.26 25.6 Os06g0171300 9634.m00677 - - 2e+0 At1g78740 - S.X. H.G.
0.20 16.5 Os11g0681700 CF333263 - Hypothetical protein 2e+0 At2g20616 unknown protein S.X. H.G.
0.17 12.6 Os03g0801000 AK111357.1 - Conserved hypothetical protein 5e+0 At1g01200 ATRABA3 (ARABIDOPSIS RAB GTPASE HOMOLOG A3) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
32.3 99.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
30.5 99.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
30.1 99.7 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
30.0 99.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
28.8 99.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.6 99.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.6 99.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.9 99.5 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.7 99.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.3 99.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 1e-14 81 Os11g0671700 9639.m04167 - - 1e-1 At3g13830 F-box family protein C.G. S.X.
0.05 3e-3 44 Os09g0364800 AK068537.1 - Heavy metal transport/detoxification proteindomain containing protein 2e-2 At1g22990 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related C.G. S.X.
0.04 5e-2 40 Os03g0732800 AK107908.1 - Homeodomain-like containing protein 4e-6 At4g36870 BLH2 (BEL1-LIKE HOMEODOMAIN 2) C.G. S.X.
0.04 5e-2 40 Os11g0215200 9639.m01036 - - 5e-2 At4g19270 unknown protein C.G. S.X.
0.02 1e-2 42 Os02g0556000 9630.m03338 - Glycosyl transferase, family 8 protein 2e-5 At3g18660 PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) C.G. S.X.
0.02 1e-2 42 Os06g0328900 AK110659.1 - Cytochrome P450 family protein 9e-3 At1g64950 CYP89A5 C.G. S.X.
0.02 5e-2 40 Os11g0633800 AK099786.1 - Cyclin-like F-box domain containing protein 3e-3 At4g29460 phospholipase A2 gamma, secretory low molecular weight C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 4e-4 46 Arabidopsis thaliana At5g66110 836743 metal ion binding F:metal ion binding;P:metal ion transport;C:plasma membrane;PFM - - - C.G. S.X.
0.05 2e-3 44 Glycine max GmaAffx.93232.1.S1_at CF807296 - - 3e-4 At5g66110 metal ion binding C.G. S.X.
0.03 2e-1 36 Hordeum vulgare Contig3058_at Contig3058 - - 2e-4 At1g22990 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related C.G. S.X.
0.06 4e-2 40 Populus trichocarpa PtpAffx.209905.1.S1_at pmrna19520 hypothetical protein - 3e-3 At1g29100 copper-binding family protein C.G. S.X.
0.05 3e-2 40 Triticum aestivum TaAffx.8802.1.S1_at CA620016 - - 4e+0 At5g04760 myb family transcription factor C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1619444_at CF415208 hypothetical protein LOC100242008 - 1e-9 At3g48800 sterile alpha motif (SAM) domain-containing protein C.G. S.X.
0.04 2e-1 36 Zea mays Zm.2647.1.A1_at BG268724 hypothetical protein LOC100192886 - 1e-4 At1g22990 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage