CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os11g0668600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 95.8 Os11g0668600 9639.m04140 - Hypothetical protein 2e+0 At5g65080 MAF5 (MADS AFFECTING FLOWERING 5) S.X. H.G.
0.80 94.6 Os07g0493800 9635.m03053 - Protein kinase domain containing protein 3e-4 At4g13190 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase S.X. H.G.
0.73 91.1 Os09g0309200 AK109582.1 - Hypothetical protein 3e-3 At4g25800 calmodulin-binding protein S.X. H.G.
0.67 87.2 Os11g0600500 9639.m03524 - Calcium-binding EF-hand domain containing protein 1e+0 At2g44340 VQ motif-containing protein S.X. H.G.
0.67 87.2 Os01g0816600 NM_191078.1 - Protein kinase domain containing protein 3e-7 At5g49780 ATP binding / kinase/ protein serine/threonine kinase S.X. H.G.
0.35 41.7 Os01g0810500 NM_191035.1 - Protein kinase domain containing protein 2e-5 At1g61860 protein kinase, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.7 99.3 GSM154829 Root_DMSO-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
22.0 99.3 GSM154831 Root_DMSO-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
19.8 99.1 GSM154943 Root_tZ-treatment_120min_replicate 2 GSE6719 Cytokinin responsive genes in rice
19.1 99.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.0 99.0 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.4 99.0 GSM154832 Root_DMSO-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
18.3 98.9 GSM154833 Root_tZ-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
16.2 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.9 98.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.6 98.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 36 Os09g0339700 9637.m01439 - - 2e+0 At1g29300 UNE1 (unfertilized embryo sac 1) C.G. S.X.
0.02 7e-2 40 Os01g0559200 AK102611.1 - Hypothetical protein 4e-2 At2g46140 late embryogenesis abundant protein, putative / LEA protein, putative C.G. S.X.
0.02 3e-1 38 Os05g0216700 9633.m01120 - - 2e+0 At3g29560 unknown protein C.G. S.X.
0.01 4e+0 34 Os01g0282800 AK110638.1 - Beta tubulin (Fragment) 3e-6 At5g12250 TUB6 (BETA-6 TUBULIN) C.G. S.X.
0.01 4e+0 34 Os03g0323200 AK062262.1 - CobN/magnesium chelatase family protein 2e-56 At5g13630 GUN5 (GENOMES UNCOUPLED 5) C.G. S.X.
0.01 4e+0 34 Os10g0369400 NM_196099.1 - - 2e-1 At4g35680 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 Arabidopsis thaliana At5g65080 836632 MAF5 (MADS AFFECTING FLOWERING 5) Is upregulated during vernalization and regulates flowering time. Encodes MADS-domain protein. Two variants encoding proteins of 198 and 184 amino acids have been reported. - - - C.G. S.X.
0.03 1e-2 42 Glycine max GmaAffx.87331.1.S1_at BM523161 - - 1e+1 At5g37170 O-methyltransferase family 2 protein C.G. S.X.
0.02 4e+0 32 Hordeum vulgare Contig11859_at Contig11859 - - 1e+0 At2g17560 HMGB4 (HIGH MOBILITY GROUP B 4) C.G. S.X.
0.02 2e-1 38 Populus trichocarpa Ptp.1845.1.A1_at CV256202 hypothetical protein - 4e-47 At1g30580 GTP binding C.G. S.X.
0.03 2e-6 54 Triticum aestivum Ta.7730.1.A1_at CD877595 - - 9e+0 At3g29305 unknown protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1620391_at CF211813 hypothetical protein LOC100243479 - 3e-7 At1g50575 lysine decarboxylase family protein C.G. S.X.
0.02 4e+0 32 Zea mays ZmAffx.607.1.S1_at AI715035 - - 3e+0 At1g78150 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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