CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os11g0661900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.57 77.0 Os11g0661900 AK064062.1 - Hypothetical protein 8e-1 At5g57640 - S.X. H.G.
0.53 71.3 Os04g0419600 CR282432 - Histone H3 5e-21 At1g09200 histone H3 S.X. H.G.
0.53 71.3 Os12g0628400 AK061110.1 - Fatty acid hydroxylase domain containing protein 1e-8 At4g20870 FAH2 (FATTY ACID HYDROXYLASE 2) S.X. H.G.
0.40 51.1 Os02g0303200 AK107731.1 - Hypothetical protein 1e+0 At3g26060 ATPRX Q S.X. H.G.
0.40 51.1 Os01g0866200 CA754851 - Histone H3 3e-47 At1g09200 histone H3 S.X. H.G.
0.37 45.0 Os05g0462700 AK105816.1 - Histone H4 variant TH011 6e-24 At5g59690 histone H4 S.X. H.G.
0.35 41.7 Os08g0106100 AK071868.1 - Hypothetical protein 4e-1 At3g45870 integral membrane family protein / nodulin MtN21-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
46.9 99.9 GSM99870 TCHW P13_agami control, biological rep1 GSE4438 Expression data from rice under salinity stress
36.4 99.8 GSM99874 TCHW P17_agami salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
33.5 99.8 GSM99873 TCHW P16_agami salt stress, biological rep1 GSE4438 Expression data from rice under salinity stress
32.8 99.8 GSM99871 TCHW P14_agami control, biological rep2 GSE4438 Expression data from rice under salinity stress
28.2 99.6 GSM99872 TCHW P15_agami control, biological rep3 GSE4438 Expression data from rice under salinity stress
25.7 99.5 GSM99875 TCHW P18_agami salt stress, biological rep3 GSE4438 Expression data from rice under salinity stress
13.8 98.5 GSM409421 Nipponbare_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
12.6 98.4 GSM409428 Nipponbare_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
11.8 98.3 GSM409427 Nipponbare_young panicle 2cm, biological rep3 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
11.7 98.2 GSM409422 Nipponbare_young panicle 2cm, biological rep2 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 7e-6 54 Os04g0489900 AK069310.1 - Hypothetical protein 7e-1 At1g24210 paired amphipathic helix repeat-containing protein C.G. S.X.
0.04 1e-10 69 Os10g0131000 NM_194724.1 - Disease resistance protein family protein 4e-1 At3g26125 CYP86C2 C.G. S.X.
0.02 2e-3 46 Os06g0676400 AK064503.1 - Hypothetical protein 1e+0 At5g14510 armadillo/beta-catenin repeat family protein C.G. S.X.
0.02 6e-3 44 Os08g0266300 9636.m01664 - Conserved hypothetical protein 5e-25 At1g16080 unknown protein C.G. S.X.
0.02 3e-2 42 Os01g0710600 NM_191699.1 - - 4e+0 At3g11820 SYP121 (SYNTAXIN OF PLANTS 121) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e-1 36 Arabidopsis thaliana At5g57640 835869 - F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;MOPFVB - - - C.G. S.X.
0.02 1e+0 36 Glycine max HgAffx.22514.1.S1_at BI396566 - - 7e-1 At3g49055 unknown protein C.G. S.X.
0.02 1e-1 38 Hordeum vulgare Contig16003_at Contig16003 - - 4e-1 At4g09260 unknown protein C.G. S.X.
0.02 1e+0 36 Populus trichocarpa PtpAffx.86539.1.S1_at DN500571 - - 1e+0 At3g14480 glycine/proline-rich protein C.G. S.X.
0.02 8e-1 36 Triticum aestivum TaAffx.55473.1.S1_at CA665587 - - 3e+0 At5g15670 F-box family protein C.G. S.X.
0.02 4e+0 32 Vitis vinifera 1615731_at CD801373 hypothetical protein LOC100264968 - 2e-12 At2g04030 CR88 C.G. S.X.
0.02 1e+0 34 Zea mays Zm.17312.1.A1_at CK369501 - - 5e+0 At5g39700 MYB89 (myb domain protein 89) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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