CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os11g0657300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 71.3 Os11g0657300 AK062752.1 - Small nuclear ribonucleoprotein F (snRNP-F) (Smprotein F) (Sm-F) (SmF) 2e-26 At4g30220 RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) S.X. H.G.
0.40 51.1 Os01g0220300 AK105167.1 - Conserved hypothetical protein 2e-3 At3g18760 ribosomal protein S6 family protein S.X. H.G.
0.40 51.1 Os05g0535700 AK062545.1 - Conserved hypothetical protein 5e+0 At4g27140 2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1 S.X. H.G.
0.30 32.7 Os09g0252000 BI801996 - Exonuclease RRP41 1e+0 At3g61620 RRP41 S.X. H.G.
0.18 13.7 Os12g0244200 AK120721.1 - Conserved hypothetical protein 2e+0 At2g14700 unknown protein S.X. H.G.
0.12 7.2 Os02g0102700 AK061193.1 - Small nuclear ribonucleoprotein Sm D3 (snRNP coreprotein D3) (Sm-D3) 8e-9 At1g20580 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.4 98.2 GSM302917 endo6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
8.7 97.8 GSM409429 Nipponbare_young panicle 2cm, biological rep5 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
7.3 97.5 GSM275408 Bala root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
7.3 97.5 GSM409427 Nipponbare_young panicle 2cm, biological rep3 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
6.9 97.3 GSM409422 Nipponbare_young panicle 2cm, biological rep2 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
6.7 97.3 GSM409421 Nipponbare_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
6.7 97.3 GSM159188 SAM, biological rep 3 GSE6893 Expression data for reproductive development in rice
6.6 97.3 GSM409428 Nipponbare_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
5.9 97.0 GSM195230 5d-seed GSE7951 Genome-wide gene expression profiling of rice stigma
5.7 96.9 GSM302915 emb6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.65 7e-127 454 Os02g0177500 AK062715.1 - Small nuclear ribonucleoprotein F (snRNP-F) (Smprotein F) (Sm-F) (SmF) 9e-20 At4g30220 RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) C.G. S.X.
0.04 1e-5 52 Os10g0520900 9638.m03371 - - 1e-1 At1g71910 unknown protein C.G. S.X.
0.03 2e-3 44 Os04g0475600 AK121520.1 - 2OG-Fe(II) oxygenase domain containing protein 3e+0 At5g50260 cysteine proteinase, putative C.G. S.X.
0.02 6e-4 46 Os11g0425800 AK066603.1 - - 7e-5 At5g48760 60S ribosomal protein L13A (RPL13aD) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.41 2e-26 119 Arabidopsis thaliana At4g30220 829145 RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) F:molecular_function unknown;P:unknown;C:nucleolus, small nucleolar ribonucleoprotein complex, nucleus;AMFOP - - - C.G. S.X.
0.24 3e-20 99 Glycine max Gma.8349.1.S1_at CD408617 - - 9e-14 At4g30220 RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) C.G. S.X.
0.31 5e-29 127 Hordeum vulgare Contig12490_at Contig12490 - - 9e-11 At4g30220 RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) C.G. S.X.
0.32 4e-7 56 Populus trichocarpa PtpAffx.215305.1.S1_at pmrna29409 hypothetical protein - 3e-5 At4g30220 RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) C.G. S.X.
0.33 2e-91 335 Triticum aestivum Ta.5254.1.S1_at BJ219348 - - 2e-15 At4g30220 RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) C.G. S.X.
0.26 5e-25 113 Vitis vinifera 1621679_at CB003331 similar to Os11g0657300 - 4e-22 At2g14285 - C.G. S.X.
0.35 9e-83 305 Zea mays Zm.3267.1.A1_at BE225116 small nuclear ribonucleoprotein F - 1e-13 At4g30220 RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006397 Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
L GO:0008380 The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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