CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os11g0637700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.84 96.0 Os11g0637700 AK071789.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 8e-11 At5g47620 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative S.X. H.G.
0.45 58.8 Os03g0581800 AK121839.1 - Hypothetical protein 2e-2 At2g20820 unknown protein S.X. H.G.
0.40 51.1 Os04g0658000 AK068928.1 - Possible apospory-associated like protein 5e-4 At3g61610 aldose 1-epimerase family protein S.X. H.G.
0.36 44.0 Os03g0744800 AK072451.1 - contains InterPro domain(s): IPR000348, IPR009038 2e-2 At3g22845 emp24/gp25L/p24 protein-related S.X. H.G.
0.35 41.7 Os02g0175800 AK058292.1 - Conserved hypothetical protein 2e+0 At5g28610 - S.X. H.G.
0.34 40.0 Os03g0129900 AK059624.1 - NADH-ubiquinone oxidoreductase B18 subunit familyprotein 1e+0 At4g26820 - S.X. H.G.
0.29 31.1 Os06g0653900 BI797949 - SEC61 complex gamma subunit family protein 4e-1 At5g07440 GDH2 (GLUTAMATE DEHYDROGENASE 2) S.X. H.G.
0.27 27.5 Os05g0122900 AB072977.1 - - 8e-5 At1g76200 unknown protein S.X. H.G.
0.26 25.6 Os07g0645400 AK065185.1 - NADH dehydrogenase (EC 1.6.99.3) 0 At5g08530 CI51 (51 kDa subunit of complex I) S.X. H.G.
0.25 24.1 Os03g0712700 AK121196.1 - Phosphoglucomutase, cytoplasmic 2 (EC 5.4.2.2)(Glucose phosphomutase 2) (PGM 2) 4e-1 At2g30560 glycine-rich protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.1 97.4 GSM195230 5d-seed GSE7951 Genome-wide gene expression profiling of rice stigma
5.9 97.0 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
4.6 96.3 GSM302916 endo6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
4.5 96.3 GSM302917 endo6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
3.6 95.5 GSM159201 Inflorescence (P5, 15 - 22 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
3.4 95.2 GSM275414 Azucena root tip_Before the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.3 95.1 GSM67062 IR29 salt stressed replicate 3 GSE3053 Rice salt expression
3.2 94.9 GSM195229 Endosperm GSE7951 Genome-wide gene expression profiling of rice stigma
3.0 94.6 GSM275415 Azucena root tip_Before the wax layer_Rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
2.9 94.5 GSM159202 Inflorescence (P5, 15 - 22 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 3e-61 238 Os07g0584500 AK067725.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 3e-23 At3g07810 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative C.G. S.X.
0.02 4e-11 71 Os10g0470900 AK059172.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 2e-1 At4g31430 unknown protein C.G. S.X.
0.02 1e-2 44 Os08g0470800 9636.m03686 - - 6e-4 At4g33660 unknown protein C.G. S.X.
0.01 1e-2 44 Os02g0164300 AK063785.1 - Glycosyl transferase, family 31 protein 2e-19 At2g32430 galactosyltransferase family protein C.G. S.X.
0.01 1e-2 44 Os04g0428900 AY336991.1 - COP9 protein (FUSCA protein FUS7) 8e-2 At4g33660 unknown protein C.G. S.X.
0.01 1e-2 44 Os08g0119700 9636.m00161 - Conserved hypothetical protein 1e-1 At4g19270 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 8e-11 69 Arabidopsis thaliana At5g47620 834812 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFBA - - - C.G. S.X.
0.06 3e-8 61 Glycine max Gma.6963.2.S1_at BG791023 - - 3e-27 At4g26650 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.42 9e-142 504 Hordeum vulgare Contig20899_at Contig20899 - - 6e+0 At5g06760 late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein C.G. S.X.
0.14 2e-6 56 Populus trichocarpa PtpAffx.57573.1.S1_at CK113497 hypothetical protein - 2e-37 At4g26650 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.59 0 664 Triticum aestivum TaAffx.111057.1.S1_at CA648870 - - 1e-8 At5g47620 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative C.G. S.X.
0.09 2e-5 50 Vitis vinifera 1606802_at CF207667 hypothetical protein LOC100246008 - 5e-9 At5g47620 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative C.G. S.X.
0.02 3e-2 40 Zea mays Zm.15084.1.A1_at BM350611 - - 6e-2 At1g62240 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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