CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os11g0621400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 81.2 Os11g0621400 AK062468.1 - Hypothetical protein 1e+0 At4g34290 SWIB complex BAF60b domain-containing protein S.X. H.G.
0.92 99.1 Os01g0938100 CB680541 - Photosystem II protein PsbW, class I familyprotein 2e+0 At3g44950 glycine-rich protein S.X. H.G.
0.83 95.8 Os01g0866400 BU667041 - Fructose-1,6-bisphosphatase (EC 3.1.3.11)(Fragment) 8e-38 At1g43670 fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative S.X. H.G.
0.67 87.2 Os08g0566600 AK066210.1 - Conserved hypothetical protein 3e-2 At2g05620 PGR5 (proton gradient regulation 5) S.X. H.G.
0.67 87.2 Os02g0285800 AK099035.1 - GTP-binding protein TypA family protein 4e-62 At5g13650 elongation factor family protein S.X. H.G.
0.61 81.2 Os02g0593500 AK067498.1 - - 6e-18 At3g26570 PHT2 S.X. H.G.
0.56 76.3 Os11g0432400 AK068090.1 - 2-oxoglutarate/malate translocator 2e-13 At5g19760 dicarboxylate/tricarboxylate carrier (DTC) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.2 98.9 GSM174883 A mock 3 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
14.6 98.6 GSM421719 MOCK, 24 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
14.5 98.6 GSM421701 XOO, 24 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
14.2 98.5 GSM174888 C mock 3 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
12.1 98.3 GSM421702 XOO, 24 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
11.9 98.3 GSM421679 XOC, 24 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
11.6 98.2 GSM421721 MOCK, 24 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
11.3 98.2 GSM421700 XOO, 24 hai - rep2 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
11.3 98.2 GSM174887 D FR13 3 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
11.2 98.2 GSM421720 MOCK, 24 hai - rep2 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 6e-4 46 Os10g0207300 NM_195478.1 - - 4e-1 At1g70895 CLE17 (CLAVATA3/ESR-RELATED 17) C.G. S.X.
0.03 2e-4 48 Os05g0574700 AK108682.1 - Conserved hypothetical protein 3e+0 At3g44210 unknown protein C.G. S.X.
0.03 2e-4 48 Os10g0574500 9638.m03879 - Replication factor C conserved region domaincontaining protein 2e+0 At2g17560 HMGB4 (HIGH MOBILITY GROUP B 4) C.G. S.X.
0.03 6e-4 46 Os10g0207400 AK120253.1 - Conserved hypothetical protein 4e-1 At1g70895 CLE17 (CLAVATA3/ESR-RELATED 17) C.G. S.X.
0.02 2e-4 48 Os03g0738600 AK073529.1 - Lipoxygenase L-2 (EC 1.13.11.12) 2e+0 At1g55020 LOX1 C.G. S.X.
0.02 6e-4 46 Os05g0424900 9633.m03257 - Protein of unknown function DUF632 domaincontaining protein 2e-5 At4g35240 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At4g34290 829579 SWIB complex BAF60b domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OPBMFV - - - C.G. S.X.
0.04 1e-1 38 Glycine max GmaAffx.73155.1.S1_at BI498504 - - 2e-5 At4g26620 sucrase-related C.G. S.X.
0.10 6e-13 73 Hordeum vulgare Contig9123_at Contig9123 - - 2e+0 At1g68725 AGP19 (ARABINOGALACTAN-PROTEIN 19) C.G. S.X.
0.05 4e-1 36 Populus trichocarpa PtpAffx.216062.1.S1_at pmrna30622 hypothetical protein - 1e-1 At5g04080 unknown protein C.G. S.X.
0.09 2e-5 50 Triticum aestivum Ta.7930.1.S1_at CK212302 - - 2e+1 At5g25840 unknown protein C.G. S.X.
0.04 3e-1 34 Vitis vinifera 1610294_at CF373126 - - 4e-13 At4g25835 AAA-type ATPase family protein C.G. S.X.
0.10 8e-6 50 Zea mays Zm.11723.1.A1_at BM380214 hypothetical protein LOC100275364 - 5e+0 At5g37200 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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