CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os11g0599500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os11g0599500 9639.m03514 - DEAD-box protein 3, Y-chromosomal 4e-40 At3g58570 DEAD box RNA helicase, putative S.X. H.G.
0.27 27.5 Os02g0294700 AK070497.1 - Conserved hypothetical protein 7e-6 At1g79090 unknown protein S.X. H.G.
0.21 17.9 Os07g0409700 AK072253.1 - Mitochondrial import inner membrane translocase,subunit Tim44 family protein 3e-7 At2g20510 ATTIM44-1 S.X. H.G.
0.13 8.2 Os02g0150800 BX901712 - Cyclin-like F-box domain containing protein 8e-1 At1g32470 glycine cleavage system H protein, mitochondrial, putative S.X. H.G.
0.13 8.2 Os02g0150100 AK100093.1 - The start codon is not identified. 6e-15 At5g51280 DEAD-box protein abstrakt, putative S.X. H.G.
0.10 5.7 Os05g0277300 AK058300.1 - Peptide chain release factor 1 4e-27 At2g47020 peptide chain release factor, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.8 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.0 97.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 4e-23 111 Os03g0805200 AK066048.1 - RNA helicase (Fragment) 3e-26 At3g58570 DEAD box RNA helicase, putative C.G. S.X.
0.06 9e-18 93 Os06g0602400 AK106474.1 - ATP-dependent RNA helicase-like protein 2e-8 At3g58510 DEAD box RNA helicase, putative (RH11) C.G. S.X.
0.01 5e-4 48 Os02g0512300 AK073819.1 - Conserved hypothetical protein 2e-8 At5g51140 pseudouridine synthase family protein C.G. S.X.
0.01 5e-4 48 Os12g0624100 AK107389.1 - Hypothetical protein 1e-2 At5g44450 methyltransferase C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 4e-40 167 Arabidopsis thaliana At3g58570 825026 DEAD box RNA helicase, putative F:helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding;P:unknown;C:chloroplast;MBOPFAV - - - C.G. S.X.
0.24 7e-21 103 Glycine max GmaAffx.69348.1.S1_at BM892310 - - 4e-26 At2g42520 DEAD box RNA helicase, putative C.G. S.X.
0.23 3e-73 276 Hordeum vulgare Contig19026_at Contig19026 - - 2e-5 At3g58510 DEAD box RNA helicase, putative (RH11) C.G. S.X.
0.35 2e-42 174 Populus trichocarpa PtpAffx.200043.1.S1_x_at pmrna74 hypothetical protein - 1e-89 At3g58570 DEAD box RNA helicase, putative C.G. S.X.
0.65 0 1340 Triticum aestivum Ta.10226.1.S1_at CD490522 - - 3e-22 At3g58570 DEAD box RNA helicase, putative C.G. S.X.
0.31 2e-107 389 Vitis vinifera 1622644_at CB007566 hypothetical protein LOC100250337 - 6e-172 At2g42520 DEAD box RNA helicase, putative C.G. S.X.
0.43 0 757 Zea mays Zm.4572.1.S1_at CA399691 hypothetical protein LOC100277482 - 3e-37 At2g42520 DEAD box RNA helicase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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