Gene omics information

Query gene ID	Os11g0592100
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	94.6	Os11g0592100	AY435041.1	-	Barwin	6e-3	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.32	36.3	Os08g0189600	AF032976.1	-	Germin-like protein 6	5e-1	At5g38930	germin-like protein, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.29	31.1	Os07g0129200	AF251277.1	-	PR1a protein	1e-1	At4g33730	pathogenesis-related protein, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.21	17.9	Os08g0189900	AF141879.1	-	Oxalate oxidase-like protein or germin-likeprotein (Germin-like 8) (Germin-like 12)	1e-1	At5g38950	germin-like protein-related	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.09	4.9	Os02g0102300	AK067143.1	-	Rhodanese-like domain containing protein	2e+0	At5g28630	glycine-rich protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.08	4.2	Os01g0949700	AK069037.1	-	Glutathione S-transferase, C-terminal domaincontaining protein	2e-2	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.07	3.7	Os07g0124900	AY339373.1	-	PR1a protein	6e+0	At5g18210	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.1	99.1	GSM159209	Seed (S1, 0 - 2 dap), biological rep 3	GSE6893	Expression data for reproductive development in rice
17.2	98.8	GSM100446	Rice Bala 1ppm Arsenate Rep2	GSE4471	Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
16.2	98.8	GSM431927	Root- -Fe+P biological rep1	GSE17245	Transcriptome analysis of iron and phosphorus interaction in rice seedlings
16.2	98.8	GSM100445	Rice Bala 1ppm Arsenate Rep1	GSE4471	Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
15.2	98.7	GSM149410	Rice Azucena 1ppm Arsenate Rep3	GSE4471	Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
15.0	98.6	GSM431928	Root- -Fe+P biological rep2	GSE17245	Transcriptome analysis of iron and phosphorus interaction in rice seedlings
14.4	98.6	GSM159207	Seed (S1, 0 - 2 dap), biological rep 1	GSE6893	Expression data for reproductive development in rice
13.5	98.5	GSM431932	Root- -Fe-P biological rep2	GSE17245	Transcriptome analysis of iron and phosphorus interaction in rice seedlings
12.8	98.4	GSM431931	Root- -Fe-P biological rep1	GSE17245	Transcriptome analysis of iron and phosphorus interaction in rice seedlings
12.0	98.3	GSM159208	Seed (S1, 0 - 2 dap), biological rep 2	GSE6893	Expression data for reproductive development in rice

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.50	2e-84	313	Os11g0592000	AK121059.1	-	Barwin	7e-3	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.34	4e-21	103	Os11g0591800	9639.m03440	-	Wound-induced protein WIN2 precursor	4e-9	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.10	1e-11	71	Os11g0592200	AY050642.1	-	Barwin domain containing protein	8e-2	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.06	2e-6	54	Os01g0623600	AK103106.1	-	Glycoside hydrolase, family 28 protein	2e-1	At3g57510	ADPG1	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.05	4e-5	50	Os01g0587400	AK121329.1	-	S-locus glycoprotein family protein	9e-2	At2g19130	S-locus lectin protein kinase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	2e-1	38	Os11g0492700	9639.m02716	-	Esterase/lipase/thioesterase domain containingprotein	1e-3	At4g37140	MEE69 (MATERNAL EFFECT EMBRYO ARREST 69)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	3e-3	44	Os06g0212900	AK071518.1	-	Heat shock protein Hsp70 family protein	2e-1	At4g16190	cysteine proteinase, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	3e-3	44	Os06g0612900	9634.m03944	-	Conserved hypothetical protein	4e-7	At5g12960	catalytic	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	5e-2	40	Os01g0120700	AK067227.1	-	Conserved hypothetical protein	1e+0	At3g63400	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	6e-3	42	Arabidopsis thaliana	At3g04720	819632	PR4 (PATHOGENESIS-RELATED 4)	Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-4	48	Glycine max	GmaAffx.92499.1.S1_s_at	CF809203	Win gene encoding wound-induced protein	-	2e-15	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please select
0.28	4e-30	131	Hordeum vulgare	Contig2550_x_at	Contig2550	pathogenesis-related protein 4	-	4e-4	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please select
0.04	2e+0	34	Populus trichocarpa	PtpAffx.210178.1.S1_at	pmrna20054	-	-	6e-1	At4g31000	calmodulin-binding protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.24	6e-37	155	Triticum aestivum	Ta.9226.1.S1_at	CD915938	Pathogenesis-related protein 4	-	7e+0	At5g45890	SAG12 (SENESCENCE-ASSOCIATED GENE 12)	C.G.	S.X.	Please select
0.07	3e-5	48	Vitis vinifera	1618835_s_at	BQ797163	hypothetical protein LOC100255405	-	2e-11	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please select
0.20	1e-11	69	Zea mays	Zm.1506.1.A1_at	X82184.1	defence-related protein	-	1e-1	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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