CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os11g0592000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.59 78.0 Os11g0592000 AK121059.1 - Barwin 7e-3 At3g04720 PR4 (PATHOGENESIS-RELATED 4) S.X. H.G.
0.50 68.0 Os03g0663500 U77656.1 - Thaumatin, pathogenesis-related family protein 7e+0 At3g25400 - S.X. H.G.
0.38 46.9 Os09g0472900 BI797815 - Expansin-related protein 2 precursor (AtEXPR2)(Ath-ExpGamma-1.1) 8e+0 At3g03920 Gar1 RNA-binding region family protein S.X. H.G.
0.29 31.1 Os10g0542900 BM038035 - Chitinase (EC 3.2.1.14) (Fragment) 3e-5 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) S.X. H.G.
0.23 21.2 Os11g0592200 AY050642.1 - Barwin domain containing protein 8e-2 At3g04720 PR4 (PATHOGENESIS-RELATED 4) S.X. H.G.
0.09 4.9 Os09g0379500 AK069390.1 - Conserved hypothetical protein 2e+0 At5g28000 Bet v I allergen family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
42.2 99.9 GSM159209 Seed (S1, 0 - 2 dap), biological rep 3 GSE6893 Expression data for reproductive development in rice
40.3 99.9 GSM159207 Seed (S1, 0 - 2 dap), biological rep 1 GSE6893 Expression data for reproductive development in rice
28.1 99.6 GSM159208 Seed (S1, 0 - 2 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
27.0 99.6 GSM154959 Leaf_OsRR6-overexpressor_replicate 1 GSE6720 Gene expression in OsRR6-overexpression line
16.1 98.7 GSM159210 Seed (S2, 3 - 4 dap), biological rep 1 GSE6893 Expression data for reproductive development in rice
12.8 98.4 GSM100446 Rice Bala 1ppm Arsenate Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
12.1 98.3 GSM302922 seedling_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
11.6 98.2 GSM159211 Seed (S2, 3 - 4 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
11.3 98.2 GSM195225 Shoot GSE7951 Genome-wide gene expression profiling of rice stigma
8.5 97.7 GSM375647 Taichung 65_shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.50 2e-84 313 Os11g0592100 AY435041.1 - Barwin 6e-3 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.23 8e-29 129 Os11g0591800 9639.m03440 - Wound-induced protein WIN2 precursor 4e-9 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.13 3e-10 67 Os11g0592200 AY050642.1 - Barwin domain containing protein 8e-2 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.04 1e-2 42 Os04g0284500 AK119323.1 - Hypothetical protein 2e+0 At2g01540 C2 domain-containing protein C.G. S.X.
0.03 1e-3 46 Os01g0865100 AK071410.1 - Uricase (Fragment) 4e-5 At2g26230 uricase / urate oxidase / nodulin 35, putative C.G. S.X.
0.02 2e-4 48 Os06g0181500 AK100878.1 - Plasma membrane H+-ATPase (EC 3.6.1.3) 2e-6 At1g80660 AHA9 C.G. S.X.
0.02 4e-3 44 Os06g0212900 AK071518.1 - Heat shock protein Hsp70 family protein 2e-1 At4g16190 cysteine proteinase, putative C.G. S.X.
0.01 4e-3 44 Os12g0166500 AK068475.1 - Hypothetical protein 8e-3 At1g63810 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 7e-3 42 Arabidopsis thaliana At3g04720 819632 PR4 (PATHOGENESIS-RELATED 4) Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection. - - - C.G. S.X.
0.09 6e-1 36 Glycine max Gma.5489.1.S1_at BM107863 - - 8e-1 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.43 2e-69 262 Hordeum vulgare Contig2550_x_at Contig2550 pathogenesis-related protein 4 - 4e-4 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.10 4e-5 50 Populus trichocarpa PtpAffx.47069.1.A1_at CV238066 hypothetical protein - 2e-6 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.35 4e-63 242 Triticum aestivum Ta.9226.1.S1_at CD915938 Pathogenesis-related protein 4 - 7e+0 At5g45890 SAG12 (SENESCENCE-ASSOCIATED GENE 12) C.G. S.X.
0.07 9e-3 40 Vitis vinifera 1620518_at CF201341.1 - - 9e-14 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.39 5e-45 180 Zea mays Zm.2227.1.A1_at BM381059 hypothetical protein LOC100191593 - 6e-3 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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