CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os11g0590700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.89 96.9 Os11g0590700 AK066717.1 - Disease resistance protein family protein 1e-1 At5g05230 ubiquitin-protein ligase S.X. H.G.
0.76 92.2 Os07g0601100 AK062499.1 - NADPH HC toxin reductase (Fragment) 3e+0 At5g19440 cinnamyl-alcohol dehydrogenase, putative (CAD) S.X. H.G.
0.58 77.0 Os12g0567300 AK107214.1 - Snapdragon myb protein 305 homolog 5e-14 At3g46130 MYB111 (MYB DOMAIN PROTEIN 111) S.X. H.G.
0.50 68.0 Os01g0297200 AK109883.1 - AAA ATPase, central region domain containingprotein 6e-5 At4g25835 AAA-type ATPase family protein S.X. H.G.
0.48 63.7 Os04g0189012 9632.m00980 - - 2e+0 At5g13910 LEP (LEAFY PETIOLE) S.X. H.G.
0.47 62.3 Os11g0700500 AK111626.1 - Myb, DNA-binding domain containing protein 1e-8 At5g59780 MYB59 (MYB DOMAIN PROTEIN 59) S.X. H.G.
0.44 58.1 Os08g0176900 AK107028.1 - - 1e+0 At5g17080 cathepsin-related S.X. H.G.
0.35 41.7 Os05g0114700 AK111634.1 - Myb, DNA-binding domain containing protein 7e-5 At4g38620 MYB4 S.X. H.G.
0.35 41.7 Os02g0588700 AK100801.1 - Conserved hypothetical protein 2e+0 At3g60110 DNA binding S.X. H.G.
0.35 41.7 Os01g0347200 AK066458.1 - Hypothetical protein 1e+0 At5g27440 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
33.3 99.8 GSM262016 Nipponbare, 4 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
32.0 99.7 GSM262020 Nipponbare, 11 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
24.8 99.5 GSM262021 Nipponbare, 11 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
21.2 99.2 GSM262017 Nipponbare, 4 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
19.4 99.0 GSM262004 IAC165, 4 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
18.5 99.0 GSM262008 IAC165, 11 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
17.7 98.9 GSM262009 IAC165, 11 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
14.8 98.6 GSM302921 root_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
11.8 98.3 GSM149409 Rice Azucena 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
11.2 98.2 GSM149410 Rice Azucena 1ppm Arsenate Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.34 1e-61 240 Os11g0590900 9639.m03433 - Disease resistance protein family protein 1e+0 At1g36675 glycine-rich protein C.G. S.X.
0.27 4e-37 159 Os11g0590400 9639.m03431 - Disease resistance protein family protein 3e-1 At3g12960 unknown protein C.G. S.X.
0.21 4e-43 178 Os07g0294100 9635.m01948 - - 9e-2 At5g62850 AtVEX1 (VEGETATIVE CELL EXPRESSED1) C.G. S.X.
0.20 2e-23 113 Os11g0588600 AK066312.1 - Disease resistance protein family protein 1e-1 At5g54460 wound-responsive protein-related C.G. S.X.
0.19 1e-30 137 Os11g0588400 AK066872.1 - Disease resistance protein family protein 4e-1 At3g50550 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e-1 40 Arabidopsis thaliana At5g05230 830405 ubiquitin-protein ligase F:ubiquitin-protein ligase activity;P:protein ubiquitination;C:ubiquitin ligase complex;PMFBO - - - C.G. S.X.
0.01 6e-1 38 Glycine max GmaAffx.56323.1.S1_at BU764214 - - 8e-1 At4g38790 ER lumen protein retaining receptor family protein C.G. S.X.
0.03 4e-3 44 Hordeum vulgare AY009939_CDS-2_s_at AY009939_CDS-2 - - 4e-1 At3g43630 nodulin, putative C.G. S.X.
0.01 4e-2 42 Populus trichocarpa PtpAffx.225681.1.S1_at pmrna45208 cc-nbs-lrr resistance protein - 6e-6 At3g50950 disease resistance protein (CC-NBS-LRR class), putative C.G. S.X.
0.03 2e-3 46 Triticum aestivum Ta.24087.2.S1_a_at AY487917.1 mla-like protein - 5e+0 At5g67040 unknown protein C.G. S.X.
0.01 5e-1 36 Vitis vinifera 1609237_at CF205706.1 - - 3e-1 At1g15800 unknown protein C.G. S.X.
0.01 5e-2 40 Zea mays Zm.13362.1.S1_at CA828313 calmodulin binding protein - 3e-1 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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