CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os11g0557700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os11g0557700 AK107593.1 - SAM (and some other nucleotide) binding motifdomain containing protein 9e-7 At4g34360 protease-related S.X. H.G.
0.40 51.1 Os02g0536400 AK120158.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 2e+0 At3g47295 unknown protein S.X. H.G.
0.36 44.0 Os09g0536200 9637.m03080 - ARM repeat fold domain containing protein 7e-5 At5g66200 ARO2 (ARMADILLO REPEAT ONLY 2) S.X. H.G.
0.36 44.0 Os09g0546400 AK072378.1 - - 1e+0 At2g41225 unknown protein S.X. H.G.
0.17 12.6 Os11g0106800 9639.m00055 - Hypothetical protein 3e-1 At3g06780 glycine-rich protein S.X. H.G.
0.12 7.2 Os10g0484400 AK107124.1 - Ribosomal protein L18P/L5E family protein 3e-1 At3g22450 structural constituent of ribosome S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
32.4 99.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
31.2 99.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
30.8 99.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
29.6 99.7 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.4 99.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.0 99.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.5 99.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.6 99.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.9 99.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.6 99.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-27 125 Os01g0543600 AK120213.1 - E-class P450, group I family protein 1e+0 At4g31500 CYP83B1 (CYTOCHROME P450 MONOOXYGENASE 83B1) C.G. S.X.
0.05 5e-19 97 Os11g0545000 AK058871.1 - Hypothetical protein 5e-9 At1g52360 coatomer protein complex, subunit beta 2 (beta prime), putative C.G. S.X.
0.05 3e-14 81 Os01g0685000 AK109666.1 - Conserved hypothetical protein 2e-1 At2g11005 glycine-rich protein C.G. S.X.
0.05 5e-13 77 Os05g0571400 AK062369.1 - Conserved hypothetical protein 4e-4 At1g64355 unknown protein C.G. S.X.
0.05 5e-13 77 Os11g0594000 AK119265.1 - General substrate transporter family protein 4e-4 At1g64355 unknown protein C.G. S.X.
0.05 5e-13 77 Os11g0614500 AK109768.1 - Patatin-like protein 3 4e+0 At4g34730 ribosome-binding factor A family protein C.G. S.X.
0.02 8e-15 83 Os03g0401300 AK061713.1 - Sucrose synthase 2 (EC 2.4.1.13) (Sucrose-UDPglucosyltransferase 2) 6e-26 At5g20830 SUS1 (SUCROSE SYNTHASE 1) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 9e-7 56 Arabidopsis thaliana At4g34360 829586 protease-related F:methyltransferase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMPFA - - - C.G. S.X.
0.11 5e-12 73 Glycine max GmaAffx.60588.1.S1_at BF070555 - - 3e-13 At4g34360 protease-related C.G. S.X.
0.17 6e-37 155 Hordeum vulgare HVSMEf0011H07r2_at HVSMEf0011H07r2 - - 1e-6 At4g34360 protease-related C.G. S.X.
0.07 2e-5 52 Populus trichocarpa PtpAffx.204195.1.S1_at pmrna8257 hypothetical protein - 5e-22 At4g34360 protease-related C.G. S.X.
0.44 0 678 Triticum aestivum Ta.5582.1.S1_at CK210748 - - 1e-8 At4g34360 protease-related C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1619259_at CF517461 - - 4e+0 At4g10280 - C.G. S.X.
0.02 9e-2 38 Zea mays Zm.10459.1.S1_at BQ577894 hypothetical protein LOC100276110 - 2e+0 At5g16460 - C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage