Gene omics information

Query gene ID	Os11g0492700
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	73.7	Os11g0492700	9639.m02716	-	Esterase/lipase/thioesterase domain containingprotein	1e-3	At4g37140	MEE69 (MATERNAL EFFECT EMBRYO ARREST 69)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os04g0633200	9632.m05252	-	S-locus glycoprotein family protein	9e-8	At4g03230	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.47	62.3	Os04g0193300	AK106803.1	-	Cyclin-like F-box domain containing protein	1e-3	At5g35170	adenylate kinase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.38	46.9	Os04g0531200	9632.m04312	-	-	6e-1	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.38	46.9	Os08g0299100	9640.m02491	-	-	8e-2	At2g19330	leucine-rich repeat family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.38	46.9	Os01g0970200	NM_189446.1	-	-	2e-1	At2g23310	ATRER1C1	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.38	46.9	Os09g0371800	9637.m01757	-	-	2e-1	At1g58100	TCP family transcription factor, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
40.5	99.9	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
34.3	99.8	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
30.6	99.7	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
30.4	99.7	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
28.3	99.6	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
28.0	99.6	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.7	99.6	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
26.5	99.5	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.0	99.4	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.7	99.4	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	2e-22	107	Os01g0934800	Z34270.1	-	Alpha/beta hydrolase fold domain containingprotein	1e-1	At2g23580	MES4 (METHYL ESTERASE 4)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.14	4e-17	89	Os05g0370700	AK108862.1	-	Alpha/beta hydrolase family protein	1e-4	At4g37140	MEE69 (MATERNAL EFFECT EMBRYO ARREST 69)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.10	2e-22	107	Os04g0422100	9632.m03313	-	-	9e-1	At3g52520	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.10	1e-17	91	Os11g0665301	9639.m04113	-	-	1e+1	At3g21352	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.07	4e-17	89	Os05g0500100	9633.m03949	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	2e+0	At3g22560	GCN5-related N-acetyltransferase (GNAT) family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	7e-16	85	Os09g0268500	AK099706.1	-	Hypothetical protein	1e+0	At5g13340	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	1e-3	44	Arabidopsis thaliana	At4g37140	829868	MEE69 (MATERNAL EFFECT EMBRYO ARREST 69)	Encodes a protein with similarity to SABP2, a methyl salicylate esterase from tobacco. However, this protein is truncated and lacks two of the residues of the predicted catalytic triad, suggesting that it does not have this enzymatic activity.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-1	38	Glycine max	PsAffx.C82000031_at	PsAffx.C82000031	-	-	3e-1	At4g18070	unknown protein	C.G.	S.X.	Please select
0.26	1e-11	69	Hordeum vulgare	Contig10373_at	Contig10373	-	-	1e-4	At2g23580	MES4 (METHYL ESTERASE 4)	C.G.	S.X.	Please select
0.04	4e-1	36	Populus trichocarpa	PtpAffx.218717.1.S1_at	pmrna34439	-	-	7e-1	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.21	3e-13	75	Triticum aestivum	TaAffx.5312.1.S1_x_at	CA715271	-	-	1e-2	At2g23580	MES4 (METHYL ESTERASE 4)	C.G.	S.X.	Please select
0.04	1e+0	32	Vitis vinifera	1620074_at	CD713563	hypothetical protein LOC100244152	-	2e-39	At3g22930	calmodulin, putative	C.G.	S.X.	Please select
0.04	3e-2	38	Zea mays	Zm.235.1.S1_at	AJ011614.1	SBP-domain protein1	-	1e-5	At2g33810	SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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