CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os11g0487600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.82 95.0 Os11g0487600 CB618435 - Cytochrome P450 family protein 1e-4 At3g61880 CYP78A9 (CYTOCHROME P450 78A9) S.X. H.G.
0.32 36.3 Os12g0484600 AK058449.1 - Nodule-specific protein-like 1e-2 At1g63030 ddf2 (DWARF AND DELAYED FLOWERING 2) S.X. H.G.
0.26 25.6 Os01g0695700 CA766063 - Multidrug resistance protein 1 homolog 5e-7 At4g18050 PGP9 (P-GLYCOPROTEIN 9) S.X. H.G.
0.06 3.0 Os10g0406300 AK068588.1 - The start codon is not identified. 5e-17 At2g34140 Dof-type zinc finger domain-containing protein S.X. H.G.
0.06 3.0 Os01g0158400 AK102322.1 - Galactose-binding like domain containing protein 2e+0 At5g63000 unknown protein S.X. H.G.
0.04 2.0 Os10g0521500 AK105796.1 - Esterase/lipase/thioesterase domain containingprotein 3e+0 At5g02750 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.04 2.0 Os09g0272000 AK068208.1 - Heavy metal transport/detoxification proteindomain containing protein 1e-1 At5g57290 60S acidic ribosomal protein P3 (RPP3B) S.X. H.G.
0.04 2.0 Os01g0650100 AK063873.1 - Hypothetical protein 1e+0 At2g29530 mitochondrial import inner membrane translocase (TIM10) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.7 99.3 GSM262005 IAC165, 4 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
20.8 99.2 GSM262020 Nipponbare, 11 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
17.4 98.9 GSM262019 Nipponbare, 11 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
15.9 98.7 GSM421706 XOO, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
14.9 98.6 GSM421726 MOCK, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
14.8 98.6 GSM262018 Nipponbare, 11 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
11.3 98.2 GSM262014 Nipponbare, 4 days after mock-infection, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
10.9 98.1 GSM262007 IAC165, 11 days after mock-infection, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
10.7 98.1 GSM421686 XOC, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
10.6 98.1 GSM262009 IAC165, 11 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 8e-4 46 Os09g0528700 9637.m03020 - Cytochrome p450 (CYP78A9) 6e-7 At3g61880 CYP78A9 (CYTOCHROME P450 78A9) C.G. S.X.
0.04 8e-1 36 Os03g0417700 9631.m02978 - E-class P450, group I family protein 9e-16 At1g74110 CYP78A10 C.G. S.X.
0.03 2e-1 38 Os03g0134500 9631.m00332 - Cytochrome p450 (CYP78A9) 3e+0 At2g46660 CYP78A6 C.G. S.X.
0.03 8e-1 36 Os09g0279300 9637.m00834 - Mitochondrial import inner membrane translocase,subunit Tim17/22 family protein 3e+0 At3g21390 mitochondrial substrate carrier family protein C.G. S.X.
0.01 2e-1 38 Os10g0151800 AK066347.1 - - 3e-8 At4g00830 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.01 8e-1 36 Os05g0379500 AK121450.1 - NBS-LRR protein (Fragment) 7e-1 At4g11680 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 8e-1 36 Os05g0380300 AK120094.1 - NBS-LRR protein (Fragment) 6e-1 At3g62090 PIL2 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 1e-4 48 Arabidopsis thaliana At3g61880 825361 CYP78A9 (CYTOCHROME P450 78A9) Encodes a cytochrome p450 monooxygenase. Overexpression of this gene allows fruit growth independently of fertilization. The gene is normally expressed only in floral organs(during the Arabidopsis stage 14 flower) and in the funiculus at anthesis. - - - C.G. S.X.
0.13 2e-4 48 Glycine max Gma.8215.2.S1_at BQ296859 - - 3e-4 At2g46660 CYP78A6 C.G. S.X.
0.09 1e-5 50 Hordeum vulgare HU13P05r_at HU13P05r - - 1e+0 At3g61880 CYP78A9 (CYTOCHROME P450 78A9) C.G. S.X.
0.04 4e-2 40 Populus trichocarpa PtpAffx.44494.1.A1_at CV247178 cytochrome P450 - 2e-9 At2g46660 CYP78A6 C.G. S.X.
0.04 2e+0 34 Triticum aestivum TaAffx.42466.1.S1_at BF294046 - - 2e-7 At5g04330 cytochrome P450, putative / ferulate-5-hydroxylase, putative C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1619648_s_at CF204375.1 hypothetical protein LOC100257577 - 2e+0 At1g48940 plastocyanin-like domain-containing protein C.G. S.X.
0.03 2e-4 46 Zea mays Zm.197.1.S1_at L23209.1 cytochrome P-450 8 - 3e-4 At1g74110 CYP78A10 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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