CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os11g0472500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os11g0472500 AK073686.1 - Protein of unknown function UPF0016 family protein 5e-17 At5g36290 unknown protein S.X. H.G.
0.67 87.2 Os01g0349400 AK122182.1 - Serine/threonine protein phosphatase PP1 (EC3.1.3.16) 5e-8 At3g05580 serine/threonine protein phosphatase, putative S.X. H.G.
0.57 77.0 Os06g0708300 AU031793 - RER1B protein (AtRER1B) 3e-1 At4g39220 ATRER1A S.X. H.G.
0.44 58.1 Os05g0437200 AK121867.1 - Protein of unknown function DUF502 family protein 4e-24 At1g43130 LCV2 (LIKE COV 2) S.X. H.G.
0.38 46.9 Os01g0867900 AK061366.1 - - 2e-19 At1g43130 LCV2 (LIKE COV 2) S.X. H.G.
0.38 46.9 Os01g0157900 AK072658.1 - Uncharacterized Cys-rich domain containing protein 6e-4 At2g37110 unknown protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.4 97.9 GSM278850 KT95-418-RSV infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
7.8 97.6 GSM278849 WuYun3-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
7.6 97.5 GSM278851 KT95-418-RSV infected,biological rep2 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
7.2 97.4 GSM278846 WuYun3-RSV infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
6.5 97.2 GSM278854 KT95-418-non-infected, biological rep2 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
6.4 97.2 GSM278848 WuYun3-non-infected, biological rep2 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
5.6 96.9 GSM278844 WuYun3-RSV infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
5.1 96.6 GSM278847 WuYun3-non-infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
5.0 96.6 GSM278852 KT95-418-RSV infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
4.2 96.0 GSM173093 Rice OsSRT1 RNAi transgenic line LM2 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 4e-7 57 Os08g0528500 AK111028.1 - Protein of unknown function UPF0016 family protein 3e-2 At5g36290 unknown protein C.G. S.X.
0.02 3e-1 38 Os02g0805700 AK073676.1 - Conserved hypothetical protein 1e+0 At2g37195 unknown protein C.G. S.X.
0.01 9e-2 40 Os03g0102400 AK121721.1 - Conserved hypothetical protein 1e-15 At5g61450 2-phosphoglycerate kinase-related C.G. S.X.
0.01 9e-2 40 Os07g0466200 AK106501.1 - Conserved hypothetical protein 2e-17 At5g61450 2-phosphoglycerate kinase-related C.G. S.X.
0.01 3e-1 38 Os08g0519600 AK105273.1 - Conserved hypothetical protein 7e-17 At3g20260 structural constituent of ribosome C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 5e-17 89 Arabidopsis thaliana At5g36290 833627 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;BMOPFA - - - C.G. S.X.
0.24 5e-21 103 Glycine max Gma.10004.1.S1_at BF070937 - - 6e-25 At5g36290 unknown protein C.G. S.X.
0.13 2e-21 103 Hordeum vulgare Contig14363_at Contig14363 - - 4e-8 At5g36290 unknown protein C.G. S.X.
0.33 5e-27 123 Populus trichocarpa PtpAffx.6482.1.S1_at CV260043 predicted membrane protein - 4e-82 At5g36290 unknown protein C.G. S.X.
0.15 9e-25 115 Triticum aestivum Ta.9324.2.S1_a_at CA659465 - - 4e-4 At5g36290 unknown protein C.G. S.X.
0.34 8e-35 147 Vitis vinifera 1611691_s_at CB980403 hypothetical protein LOC100265089 - 6e-59 At5g36290 unknown protein C.G. S.X.
0.47 1e-166 585 Zea mays Zm.5147.1.A1_at CK787170 - - 2e-25 At5g36290 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage