CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os11g0460700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os11g0460700 AK119432.1 - Protein prenyltransferase domain containingprotein 1e+0 At5g03780 TRFL10 (TRF-LIKE 10) S.X. H.G.
0.35 41.7 Os08g0225000 9636.m01262 - Beta-hydroxyacyl-ACP dehydratase precursor (Fattyacid synthesis protein) 2e-17 At2g22230 beta-hydroxyacyl-ACP dehydratase, putative S.X. H.G.
0.33 38.8 Os02g0302900 AK110752.1 - Reticulon family protein 1e-2 At5g11060 KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4) S.X. H.G.
0.25 24.1 Os02g0303200 AK107731.1 - Hypothetical protein 1e+0 At3g26060 ATPRX Q S.X. H.G.
0.13 8.2 Os04g0672300 AK101246.1 - Conserved hypothetical protein 5e-1 At5g48290 heavy-metal-associated domain-containing protein S.X. H.G.
0.10 5.7 Os06g0660400 AK111110.1 - Conserved hypothetical protein 7e-5 At3g26790 FUS3 (FUSCA 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
75.6 99.9 GSM302915 emb6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
60.1 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
50.8 99.9 GSM302914 emb6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
18.3 98.9 GSM195228 Embryo GSE7951 Genome-wide gene expression profiling of rice stigma
6.2 97.1 GSM99874 TCHW P17_agami salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
5.6 96.9 GSM99870 TCHW P13_agami control, biological rep1 GSE4438 Expression data from rice under salinity stress
5.6 96.9 GSM99871 TCHW P14_agami control, biological rep2 GSE4438 Expression data from rice under salinity stress
5.3 96.7 GSM159272 Rice coleoptiles, 4 days old, anoxic, REPLICATE 2 (Sample #12) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
4.6 96.3 GSM99858 TCHW P1_m103 control, biological rep1 GSE4438 Expression data from rice under salinity stress
4.5 96.3 GSM99875 TCHW P18_agami salt stress, biological rep3 GSE4438 Expression data from rice under salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.36 0 801 Os02g0546700 AK110754.1 - Hypothetical protein 2e-1 At4g32710 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase C.G. S.X.
0.34 0 1168 Os01g0880900 AK069671.1 - - 4e+0 At3g52520 unknown protein C.G. S.X.
0.03 1e-17 93 Os07g0296000 AK073416.1 - Conserved hypothetical protein 5e-1 At4g29520 - C.G. S.X.
0.02 1e-17 93 Os04g0175300 AK120827.1 - Conserved hypothetical protein 3e+0 At2g17300 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e+0 36 Arabidopsis thaliana At5g03780 831726 TRFL10 (TRF-LIKE 10) Encodes a protein whose sequence is similar to human telomere proteins. This belongs to TRFL family 2, which do not show DNA binding in vitro. - - - C.G. S.X.
0.02 1e-1 40 Glycine max GmaAffx.6916.1.S1_at AI988554 - - 2e-1 At3g32190 - C.G. S.X.
0.01 3e+0 34 Hordeum vulgare Contig12812_s_at Contig12812 - - 4e+0 At4g09440 unknown protein C.G. S.X.
0.01 5e-1 38 Populus trichocarpa PtpAffx.5712.1.S1_at CV237759 hypothetical protein - 3e-2 At3g13310 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.01 4e-1 38 Triticum aestivum TaAffx.108155.1.S1_at CA691150 - - 3e-1 At1g60980 ATGA20OX4 (ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 4) C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1609283_at CF517947 hypothetical protein LOC100243520 - 3e-25 At1g06440 ubiquitin thiolesterase C.G. S.X.
0.01 9e+0 32 Zea mays Zm.9934.1.A1_at BM332751 - - 2e+0 At5g59740 UDP-galactose/UDP-glucose transporter-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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