CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os11g0456000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 91.1 Os11g0456000 AK121173.1 - Rapid ALkalinization Factor family protein 5e-3 At1g58420 - S.X. H.G.
0.80 94.6 Os01g0753800 AK121555.1 - Conserved hypothetical protein 3e+0 At5g47640 NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2) S.X. H.G.
0.80 94.6 Os01g0652000 NM_192389.1 - - 1e-3 At4g18570 proline-rich family protein S.X. H.G.
0.71 89.6 Os01g0814100 AK061173.1 - Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein 5e-1 At2g14170 ALDH6B2 S.X. H.G.
0.67 87.2 Os07g0565800 AK062834.1 - Conserved hypothetical protein 2e+0 At3g25577 unknown protein S.X. H.G.
0.25 24.1 Os06g0478600 AK064086.1 - Leucine-rich repeat, plant specific containingprotein 9e-1 At5g01380 transcription factor S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
28.9 99.6 GSM159202 Inflorescence (P5, 15 - 22 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
19.0 99.0 GSM99871 TCHW P14_agami control, biological rep2 GSE4438 Expression data from rice under salinity stress
17.7 98.9 GSM99872 TCHW P15_agami control, biological rep3 GSE4438 Expression data from rice under salinity stress
16.1 98.7 GSM99875 TCHW P18_agami salt stress, biological rep3 GSE4438 Expression data from rice under salinity stress
14.4 98.6 GSM159203 Inflorescence (P5, 15 - 22 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
13.5 98.5 GSM99877 TCHW P19_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
13.5 98.5 GSM99874 TCHW P17_agami salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
12.3 98.3 GSM99858 TCHW P1_m103 control, biological rep1 GSE4438 Expression data from rice under salinity stress
11.4 98.2 GSM99860 TCHW P3_m103 control, biological rep3 GSE4438 Expression data from rice under salinity stress
10.4 98.1 GSM159201 Inflorescence (P5, 15 - 22 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 7e-4 46 Os10g0328900 9638.m01510 - - 1e-2 At3g05490 RALFL22 (ralf-like 22) C.G. S.X.
0.03 7e-4 46 Os08g0557100 AK070743.1 - 28 kDa ribonucleoprotein, chloroplast precursor(28RNP) 4e-5 At1g60000 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative C.G. S.X.
0.02 3e-3 44 Os03g0712100 AK106258.1 - Conserved hypothetical protein 7e-1 At2g23320 WRKY15 C.G. S.X.
0.02 1e-2 42 Os03g0752800 AY332478.1 - Transcription factor, MADS-box domain containingprotein 2e-16 At5g60910 AGL8 (agamous-like 8) C.G. S.X.
0.01 4e-2 40 Os12g0488900 AK068902.1 - ARM repeat fold domain containing protein 1e+0 At2g42260 UVI4 (UV-B-INSENSITIVE 4) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-3 42 Arabidopsis thaliana At1g58420 842211 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.03 1e-1 38 Glycine max Gma.9641.1.A1_at CA936907 - - 1e+0 At3g24490 transcription factor C.G. S.X.
0.05 4e-2 38 Hordeum vulgare HW02P03u_x_at HW02P03u - - 5e-2 At3g12510 unknown protein C.G. S.X.
0.03 3e-2 40 Populus trichocarpa Ptp.2886.1.A1_at DN492843 hypothetical protein - 2e-2 At3g20640 ethylene-responsive protein -related C.G. S.X.
0.14 4e-7 56 Triticum aestivum Ta.6376.3.S1_a_at BQ752814 - - 4e-1 At1g61920 unknown protein C.G. S.X.
0.03 4e-1 34 Vitis vinifera 1619942_at CF568925 - - 3e+0 At3g57370 transcription factor IIB (TFIIB) family protein C.G. S.X.
0.28 4e-36 151 Zea mays Zm.12147.1.A1_at BM379748 RALFL33 - 2e-1 At1g60870 MEE9 (maternal effect embryo arrest 9) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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